These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [TTTTTTTTTTTTTTTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGTTGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCCCCTCTTTCCTTTCCTTCCTTTCGTTCCCTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTGTTTTGCCTGATACGCGTTTGTTTGACGGCTTGTACTTCCTAGAGTTAACATATCTAGTCGGCTTACATTCGTTCCCGTCCGTTTCATCGGCTTACTACC] [+] EMBL AI395184 [TTTTTTTTTTTTTTTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGTTGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCCCCTCTTTCCTTTCCTTCCTTTCGTTCCCTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTGTTTTGCCTGATACGCGTTTGTTTGACGGCTTGTACTTCCTAGAGTTAACATATCTAGTCGGCTTACATTCGTTCCCGTCCGTTTCATCGGCTTACTACC] consensusID : consensus_330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [TACTACTACTTTAAACAGGAAGATGAGATACAATATATCATCCAATCTATCAATATCATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTTGTAAACATCTAGATCCCCAACATTATCATAAACAAGTATTTGAAAATGATACATATCATCTTGTAAGTAATCAATTAGATCCTAACAGATAGAATTAGTCTCTTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTCATCGATT] [+] EMBL CD121102 [TACTACTACTTTAAACAGGAAGATGAGATACAATATATCATCCAATCTATCAATATCATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTTGTAAACATCTAGATCCCCAACATTATCATAAACAAGTATTTGAAAATGATACATATCATCTTGTAAGTAATCAATTAGATCCTAACAGATAGAATTAGTCTCTTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTCATCGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_330#0 TTTTTTTTTTTTTTTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATT 60 consensus_330#1 ------------------------------------------------------------ consensus_330#0 AATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCA 120 consensus_330#1 -----------TACTACTACT--TTAAACAGGAAGATGAGATACAAT-ATATCATCCAAT 46 * * ** * ***** * * * *** * ** * ** consensus_330#0 TTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAAT 180 consensus_330#1 CTATCAATATCATTATT--TCTGATCGTG-ATCTGGTTATACAGATCCT-TCAATT--GT 100 *** * *** ****** * * * ** * ** ** **** ** * * * ** * consensus_330#0 ATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATAT 240 consensus_330#1 ATAGATATTTGTAAACATCTAGATCCCCAACAT-TATCATAAACAAGTATTTGAAAATGA 159 *** * ** * *** * * * * * * * ** ** * *** *** consensus_330#0 CACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGT 300 consensus_330#1 TACA---------TATCATCTTGTAAGTAATCAATTAGATCCTAACAGATAGAATTAGTC 210 ** ******* * ** ** ** * **** * * consensus_330#0 TCTTCTGGATGTGGTGTTGGTTGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCT 360 consensus_330#1 TCTTCATTATAATTATTTACTTAGAATTAGTCGTCA--TCAATTAGTTTTAAATGGTAAC 268 ***** ** ** ** ** ** * ** ** ***** * * consensus_330#0 TTTCCCCTCTTTCCTTTCCTTCCTTTCGTTCCCTTGGTTCCTTTCGTTCCTTTCTTGGAT 420 consensus_330#1 TTTCATCGATT------------------------------------------------- 279 **** * ** consensus_330#0 GATTTTGTTTTGCCTGATACGCGTTTGTTTGACGGCTTGTACTTCCTAGAGTTAACATAT 480 consensus_330#1 ------------------------------------------------------------ consensus_330#0 CTAGTCGGCTTACATTCGTTCCCGTCCGTTTCATCGGCTTACTACC 526 consensus_330#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||