cluster # 34

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Schistosoma mansoni
cluster # 34 cluster # 34 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_34#0 length = 897 sequences # 1

consensus_34#1 length = 616 sequences # 1

consensusID : consensus_34#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 897
fasta sequence

                              [AGTAATTAGACAGTTTAACTTTTTCATGTTTCTGAAGATTCTGACTCTAACACTTCCAATTGTGAACTAGCTATTTAAGTACCGAAAGGATTGTATCCACGATGTGACAGTGACTCCAGTTCCAGTGGGTCAATGCATTTACCCAATGTTGGTAGAGTACATTGGAGTTTTTTTTAACAATATTTTAACTTTATTCTGAGTCTACTAGTAAACAAACATGTTTATGGAAGATTTTTAGTAAATATTTTAACAAATCAGGATCCAATCATGTTCACCGGGACGGTTCAAATGAACATGGACCCTTTGGGTGAGAAAACAGATGAAGCGATTTGGAAGGCCTTGGAGAGTGTACAGATGGACAAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAACTTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTCTAGGTGGAAGCCGCATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAAAAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACATACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTATAGAATCCGTCATCCGCACGTGCTTCTTATCCCGATCTGCCGAACTGATAAAAAATACACGTGGATGCGATCGCTATCACTACTGAGCTATCAATAGCGGTATGGTCACCACAATTAGTGAGCATATGGGATATGAGTCAGAATTGCTCAATGCCGAAATATTATCGATGCTGAAATGAGACTCTATCTGATACCTACTTNTTTGATGACGACATTCATGCTTAGNTTACAGGATATTTCTGATGGAAT]

[+] EMBL CD079899             [AGTAATTAGACAGTTTAACTTTTTCATGTTTCTGAAGATTCTGACTCTAACACTTCCAATTGTGAACTAGCTATTTAAGTACCGAAAGGATTGTATCCACGATGTGACAGTGACTCCAGTTCCAGTGGGTCAATGCATTTACCCAATGTTGGTAGAGTACATTGGAGTTTTTTTTAACAATATTTTAACTTTATTCTGAGTCTACTAGTAAACAAACATGTTTATGGAAGATTTTTAGTAAATATTTTAACAAATCAGGATCCAATCATGTTCACCGGGACGGTTCAAATGAACATGGACCCTTTGGGTGAGAAAACAGATGAAGCGATTTGGAAGGCCTTGGAGAGTGTACAGATGGACAAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAACTTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTCTAGGTGGAAGCCGCATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAAAAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACATACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTATAGAATCCGTCATCCGCACGTGCTTCTTATCCCGATCTGCCGAACTGATAAAAAATACACGTGGATGCGATCGCTATCACTACTGAGCTATCAATAGCGGTATGGTCACCACAATTAGTGAGCATATGGGATATGAGTCAGAATTGCTCAATGCCGAAATATTATCGATGCTGAAATGAGACTCTATCTGATACCTACTTNTTTGATGACGACATTCATGCTTAGNTTACAGGATATTTCTGATGGAAT]




>consensus_34#0
AGTAATTAGACAGTTTAACTTTTTCATGTTTCTGAAGATTCTGACTCTAACACTTCCAAT
TGTGAACTAGCTATTTAAGTACCGAAAGGATTGTATCCACGATGTGACAGTGACTCCAGT
TCCAGTGGGTCAATGCATTTACCCAATGTTGGTAGAGTACATTGGAGTTTTTTTTAACAA
TATTTTAACTTTATTCTGAGTCTACTAGTAAACAAACATGTTTATGGAAGATTTTTAGTA
AATATTTTAACAAATCAGGATCCAATCATGTTCACCGGGACGGTTCAAATGAACATGGAC
CCTTTGGGTGAGAAAACAGATGAAGCGATTTGGAAGGCCTTGGAGAGTGTACAGATGGAC
AAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAAC
TTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTCTAGGTGGAAGCCGC
ATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAA
AAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACAT
ACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTATAGAATCCGTCA
TCCGCACGTGCTTCTTATCCCGATCTGCCGAACTGATAAAAAATACACGTGGATGCGATC
GCTATCACTACTGAGCTATCAATAGCGGTATGGTCACCACAATTAGTGAGCATATGGGAT
ATGAGTCAGAATTGCTCAATGCCGAAATATTATCGATGCTGAAATGAGACTCTATCTGAT
ACCTACTTNTTTGATGACGACATTCATGCTTAGNTTACAGGATATTTCTGATGGAAT

consensusID : consensus_34#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence

                              [GACAAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAACTTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTTTAGGTGGAAGCCGCATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAAAAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACATACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTAATAGAATCCGGTCATCCGCACGTGCTTTTTAATCCCGATCTTGCCGAGACTGATAAAAAGAATTACAACGTGGATGCAGATCGCTTATCAACTACTGATGCTATTCAAATAAGCGGTAATGGTCCACCAGCAAATTTAGTGAAGCAATATGGGGATATTGAGTCCAGAAATTTGGCTCAGATAGCACGAAAATCATTTATCGAAATGCTGAAAAATGAGGACTCTATTCTGTAATTACCTTACCTTTTTTGTAATTGTACAGACCAATTTCATAGCTCTATGTTTTACGATGTGATTATTTTTCTATGATTTGATAATAAACGAG]

[-] EMBL CD074096             [GACAAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAACTTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTTTAGGTGGAAGCCGCATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAAAAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACATACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTAATAGAATCCGGTCATCCGCACGTGCTTTTTAATCCCGATCTTGCCGAGACTGATAAAAAGAATTACAACGTGGATGCAGATCGCTTATCAACTACTGATGCTATTCAAATAAGCGGTAATGGTCCACCAGCAAATTTAGTGAAGCAATATGGGGATATTGAGTCCAGAAATTTGGCTCAGATAGCACGAAAATCATTTATCGAAATGCTGAAAAATGAGGACTCTATTCTGTAATTACCTTACCTTTTTTGTAATTGTACAGACCAATTTCATAGCTCTATGTTTTACGATGTGATTATTTTTCTATGATTTGATAATAAACGAG]




>consensus_34#1
GACAAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCT
AACTTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTTTAGGTGGAAGC
CGCATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATT
CAAAAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTA
CATACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTAATAGAATCC
GGTCATCCGCACGTGCTTTTTAATCCCGATCTTGCCGAGACTGATAAAAAGAATTACAAC
GTGGATGCAGATCGCTTATCAACTACTGATGCTATTCAAATAAGCGGTAATGGTCCACCA
GCAAATTTAGTGAAGCAATATGGGGATATTGAGTCCAGAAATTTGGCTCAGATAGCACGA
AAATCATTTATCGAAATGCTGAAAAATGAGGACTCTATTCTGTAATTACCTTACCTTTTT
TGTAATTGTACAGACCAATTTCATAGCTCTATGTTTTACGATGTGATTATTTTTCTATGA
TTTGATAATAAACGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_34#0      AGTAATTAGACAGTTTAACTTTTTCATGTTTCTGAAGATTCTGACTCTAACACTTCCAAT 60
consensus_34#1      ------------------------------------------------------------
                                                                                

consensus_34#0      TGTGAACTAGCTATTTAAGTACCGAAAGGATTGTATCCACGATGTGACAGTGACTCCAGT 120
consensus_34#1      ------------------------------------------------------------
                                                                                

consensus_34#0      TCCAGTGGGTCAATGCATTTACCCAATGTTGGTAGAGTACATTGGAGTTTTTTTTAACAA 180
consensus_34#1      ------------------------------------------------------------
                                                                                

consensus_34#0      TATTTTAACTTTATTCTGAGTCTACTAGTAAACAAACATGTTTATGGAAGATTTTTAGTA 240
consensus_34#1      ------------------------------------------------------------
                                                                                

consensus_34#0      AATATTTTAACAAATCAGGATCCAATCATGTTCACCGGGACGGTTCAAATGAACATGGAC 300
consensus_34#1      ------------------------------------------------------------
                                                                                

consensus_34#0      CCTTTGGGTGAGAAAACAGATGAAGCGATTTGGAAGGCCTTGGAGAGTGTACAGATGGAC 360
consensus_34#1      ---------------------------------------------------------GAC 3
                                                                             ***

consensus_34#0      AAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAAC 420
consensus_34#1      AAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAAC 63
                    ************************************************************

consensus_34#0      TTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTCTAGGTGGAAGCCGC 480
consensus_34#1      TTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTTTAGGTGGAAGCCGC 123
                    ********************************************* **************

consensus_34#0      ATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAA 540
consensus_34#1      ATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAA 183
                    ************************************************************

consensus_34#0      AAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACAT 600
consensus_34#1      AAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACAT 243
                    ************************************************************

consensus_34#0      ACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTA-TAGAATCCG-T 658
consensus_34#1      ACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTAATAGAATCCGGT 303
                    ************************************************ ********* *

consensus_34#0      CATCCGCACGTGCTTCTTA-TCCCGATCT-GCCGA-ACTGATAAAAAATAC----ACGTG 711
consensus_34#1      CATCCGCACGTGCTTTTTAATCCCGATCTTGCCGAGACTGATAAAAAGAATTACAACGTG 363
                    *************** *** ********* ***** ***********  *     *****

consensus_34#0      GATGC-GATCGCT-ATCA-CTACTGA-GCTATC--AATA-GCGGTA-TGGTC----ACCA 759
consensus_34#1      GATGCAGATCGCTTATCAACTACTGATGCTATTCAAATAAGCGGTAATGGTCCACCAGCA 423
                    ***** ******* **** ******* *****   **** ****** *****    * **

consensus_34#0      CAATTAGTGAGC--ATATGGG-ATAT-GAGTC-AGAATT---GCTCAA----TGCCGAAA 807
consensus_34#1      AATTTAGTGAAGCAATATGGGGATATTGAGTCCAGAAATTTGGCTCAGATAGCACGAAAA 483
                     * *******    ******* **** ***** **** *   *****       *  ***

consensus_34#0      TA--TTATCGA--TGCTGAAA--TGAG-ACTCTATCTGATACCTACTTN---TTTGATGA 857
consensus_34#1      TCATTTATCGAAATGCTGAAAAATGAGGACTCTATTCTGTAATTACCTTACCTTTTTTGT 543
                    *   *******  ********  **** *******    **  *** *    ***  ** 

consensus_34#0      CGACATTCATGCTTAGNTTACAGG---ATATTTC-TGATGGAAT---------------- 897
consensus_34#1      AATTGTACAGACCAATTTCATAGCTCTATGTTTTACGATGTGATTATTTTTCTATGATTT 603
                         * **  *  *  * * **    ** ***   ****  **                

consensus_34#0      -------------
consensus_34#1      GATAATAAACGAG 616