These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [TTCAACACCACAATCTTATCCACATGGGAATATGACTAGTGGACATGTGATATGGGAGTATCCATATGAAAGATTGAGGTCAACTGCAGATGATGGGAGGACAATTCTGTGGATTGATTTCGGACCAGATGGAGAATATGAATTAGATTTACTAGGATGTCCAAAGCCTGTAGTATTCATTCTCCACAATATATTATCTGCCAAAGTAACGAGACGTGGATTATTTGGATAATAGAAGTAACATTTCGGGAAACATTTTATTTATTTGTCAAT] [+] EMBL CD201280 [TTCAACACCACAATCTTATCCACATGGGAATATGACTAGTGGACATGTGATATGGGAGTATCCATATGAAAGATTGAGGTCAACTGCAGATGATGGGAGGACAATTCTGTGGATTGATTTCGGACCAGATGGAGAATATGAATTAGATTTACTAGGATGTCCAAAGCCTGTAGTATTCATTCTCCACAATATATTATCTGCCAAAGTAACGAGACGTGGATTATTTGGATAATAGAAGTAACATTTCGGGAAACATTTTATTTATTTGTCAAT] consensusID : consensus_3420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence [CCCAAGTGCATAGAATCACATTCGACTCCACACTCTTATCCACATGGGAATATGACTAATGGACATGAGATATGGGAGTATCCATATGAAAGATTGATGTCGACTGCGAATGATGGGAGGACAATTCTGTGGATTGATTTCGGAC] [+] EMBL CD071800 [CCCAAGTGCATAGAATCACATTCGACTCCACACTCTTATCCACATGGGAATATGACTAATGGACATGAGATATGGGAGTATCCATATGAAAGATTGATGTCGACTGCGAATGATGGGAGGACAATTCTGTGGATTGATTTCGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3420#0 --------------------TTCAACACCACAATCTTATCCACATGGGAATATGACTAGT 40 consensus_3420#1 CCCAAGTGCATAGAATCACATTCGACTCCACACTCTTATCCACATGGGAATATGACTAAT 60 *** ** ***** ************************* * consensus_3420#0 GGACATGTGATATGGGAGTATCCATATGAAAGATTGAGGTCAACTGCAGATGATGGGAGG 100 consensus_3420#1 GGACATGAGATATGGGAGTATCCATATGAAAGATTGATGTCGACTGCGAATGATGGGAGG 120 ******* ***************************** *** ***** *********** consensus_3420#0 ACAATTCTGTGGATTGATTTCGGACCAGATGGAGAATATGAATTAGATTTACTAGGATGT 160 consensus_3420#1 ACAATTCTGTGGATTGATTTCGGAC----------------------------------- 145 ************************* consensus_3420#0 CCAAAGCCTGTAGTATTCATTCTCCACAATATATTATCTGCCAAAGTAACGAGACGTGGA 220 consensus_3420#1 ------------------------------------------------------------ consensus_3420#0 TTATTTGGATAATAGAAGTAACATTTCGGGAAACATTTTATTTATTTGTCAAT 273 consensus_3420#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||