cluster # 3511

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Schistosoma mansoni
cluster # 3511 cluster # 3511 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3511#0 length = 449 sequences # 1

consensus_3511#1 length = 437 sequences # 1

consensusID : consensus_3511#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [GATTGTCCTGTCGGCAGGTTTGAATTCAGCATATTGTTCAATGGAAGTGGGAGATGACATGGAGTTGGTAGCATTGGATTCATGTTTCTTAGTGGCATAGGTGGTACACCGAAATGAGATGGTATTGGTTTACAATCCATTTCTTTTAACACACAAGGCGGACGACATGAACCGGGTGTTATACCATAAATAAAACCTTTCGGAAGATAAGAATACCTCCAAGGTTGATGGTCCATAGTTAATTCAGTTGTTGAGAGAGCATTATTTACGAGTATTTGTTGCTCCGATGGAGAATGTGGTGGAATAGGCACTGATATAAGACTTAAATTAAATATAAGGTTCAATAATCTCGTTTGTTGAGTTAAAGGATTTTGTTTGTTAATATTATCATTGTCCAGTGAAGCTTCATTATATATGAGCAAAGCATACTCGTAAATAATGCTCTCTCA]

[+] EMBL CD201015             [GATTGTCCTGTCGGCAGGTTTGAATTCAGCATATTGTTCAATGGAAGTGGGAGATGACATGGAGTTGGTAGCATTGGATTCATGTTTCTTAGTGGCATAGGTGGTACACCGAAATGAGATGGTATTGGTTTACAATCCATTTCTTTTAACACACAAGGCGGACGACATGAACCGGGTGTTATACCATAAATAAAACCTTTCGGAAGATAAGAATACCTCCAAGGTTGATGGTCCATAGTTAATTCAGTTGTTGAGAGAGCATTATTTACGAGTATTTGTTGCTCCGATGGAGAATGTGGTGGAATAGGCACTGATATAAGACTTAAATTAAATATAAGGTTCAATAATCTCGTTTGTTGAGTTAAAGGATTTTGTTTGTTAATATTATCATTGTCCAGTGAAGCTTCATTATATATGAGCAAAGCATACTCGTAAATAATGCTCTCTCA]




>consensus_3511#0
GATTGTCCTGTCGGCAGGTTTGAATTCAGCATATTGTTCAATGGAAGTGGGAGATGACAT
GGAGTTGGTAGCATTGGATTCATGTTTCTTAGTGGCATAGGTGGTACACCGAAATGAGAT
GGTATTGGTTTACAATCCATTTCTTTTAACACACAAGGCGGACGACATGAACCGGGTGTT
ATACCATAAATAAAACCTTTCGGAAGATAAGAATACCTCCAAGGTTGATGGTCCATAGTT
AATTCAGTTGTTGAGAGAGCATTATTTACGAGTATTTGTTGCTCCGATGGAGAATGTGGT
GGAATAGGCACTGATATAAGACTTAAATTAAATATAAGGTTCAATAATCTCGTTTGTTGA
GTTAAAGGATTTTGTTTGTTAATATTATCATTGTCCAGTGAAGCTTCATTATATATGAGC
AAAGCATACTCGTAAATAATGCTCTCTCA

consensusID : consensus_3511#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [ATTATTTTCGAGTATGTGATGCTCCGATGGAGAATGTGGTGGAATAGGCACTGATATAAGACTTAAATTAAATATAAGGTTCAATAATCTCGTTTGTTGAGTTAAAGGATTTTGTTTGTTAATATTATCATTGTCCAGTGAAGCTTCATTAGATATGAGCAAAGCATACACAGAAAGTGGTTCCAGTTTGGTACGTAGCCAATCACCAAGAAATTCTGGGACTGAATCACCAAGAAACAACAAGTGCGTTAAACACACCGTGATCCAGAAATCTAAATCAAAATTACTTTGATAAAAGTATCCACCCAATGTATCTGGTAACAGAGTACACTGAAGAACATTTGGCCTGAAAGGATGCAGTATAGATGTCAGTATTAAACTACACAGTTCATTTAACTTTTGTATTTCCTGATTTNCCACACATGGCCAGGGTACCG]

[-] EMBL CD168261             [ATTATTTTCGAGTATGTGATGCTCCGATGGAGAATGTGGTGGAATAGGCACTGATATAAGACTTAAATTAAATATAAGGTTCAATAATCTCGTTTGTTGAGTTAAAGGATTTTGTTTGTTAATATTATCATTGTCCAGTGAAGCTTCATTAGATATGAGCAAAGCATACACAGAAAGTGGTTCCAGTTTGGTACGTAGCCAATCACCAAGAAATTCTGGGACTGAATCACCAAGAAACAACAAGTGCGTTAAACACACCGTGATCCAGAAATCTAAATCAAAATTACTTTGATAAAAGTATCCACCCAATGTATCTGGTAACAGAGTACACTGAAGAACATTTGGCCTGAAAGGATGCAGTATAGATGTCAGTATTAAACTACACAGTTCATTTAACTTTTGTATTTCCTGATTTNCCACACATGGCCAGGGTACCG]




>consensus_3511#1
ATTATTTTCGAGTATGTGATGCTCCGATGGAGAATGTGGTGGAATAGGCACTGATATAAG
ACTTAAATTAAATATAAGGTTCAATAATCTCGTTTGTTGAGTTAAAGGATTTTGTTTGTT
AATATTATCATTGTCCAGTGAAGCTTCATTAGATATGAGCAAAGCATACACAGAAAGTGG
TTCCAGTTTGGTACGTAGCCAATCACCAAGAAATTCTGGGACTGAATCACCAAGAAACAA
CAAGTGCGTTAAACACACCGTGATCCAGAAATCTAAATCAAAATTACTTTGATAAAAGTA
TCCACCCAATGTATCTGGTAACAGAGTACACTGAAGAACATTTGGCCTGAAAGGATGCAG
TATAGATGTCAGTATTAAACTACACAGTTCATTTAACTTTTGTATTTCCTGATTTNCCAC
ACATGGCCAGGGTACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3511#0      GATTGTCCTGTCGGCAGGTTTGAATTCAGCATATTGTTCAATGGAAGTGGGAGATGACAT 60
consensus_3511#1      -ATTATTTT-CGAGTATGTGATGCTCCGATGGAGAATGTGGTGGAA-TAGGCACTGATAT 57
                       *** *  *    * * **     * *     *   *    ***** * **   *** **

consensus_3511#0      GGAGTTGGTAGCATTGGATTCATGTTTCTTAGTGGCATAGGTGGTACACCGAAATGAGAT 120
consensus_3511#1      AAGACT--TAA-ATTAAATATAAGGTTC--AATAATCTCGTTTGTTGAGTTAAA--GGAT 110
                           *  **  ***  **  * * ***  * *    * * * **  *   ***   ***

consensus_3511#0      GGTATTGGTTTACAATCCATTTCTTTTAACACACAAGGCGGACGACATGAACCGGGTGTT 180
consensus_3511#1      TTTGTTTGTTAATATT--ATCATTGTCCAGTGAAGCTTCATTAGATATGAGCAAAGCAT- 167
                        * ** *** * * *  **   * *  *   *     *    ** **** *   *  * 

consensus_3511#0      ATACCATAAATAAAACCT-TTCGGAAGATAAGAATACCTCCAAGGTTGATGGTCCATAGT 239
consensus_3511#1      ACACAGAAAGTGGTTCCAGTTTGGTACGTAGCCAATCACCAAGAAATTCTGGGAC-TGAA 226
                      * **   ** *    **  ** ** *  **   *  *  * *    *  ***  * *   

consensus_3511#0      TAATTCAGTTGTTGAGAGAGCATTATTTAC---GAGTATTTGTTGCTCCGATGGAGAATG 296
consensus_3511#1      TCACCAAGAAACAACAAGTGCGTTAAACACACCGTGATCCAGAAATCTAAATCAAAATTA 286
                      * *   **        ** ** ***   **   * *     *        **  * * * 

consensus_3511#0      TGGTGGAATAGGCACTGATATAAGACTTAAATTAAATATAAGGTTCAAT-AATCTCGTTT 355
consensus_3511#1      CTTTGATAAAAGTATCCACCCAATGT---ATCTGGTAACAGAGTACACTGAAGAACATTT 343
                         **  * * * *   *   **      *  *    * *  ** ** * **   * ***

consensus_3511#0      G--TTGAGTTAAAGGATTTTGTTTGTTAATATTATCATTGTCCAGTGAAGCTTCATTATA 413
consensus_3511#1      GGCCTGAAAGGATGCAGTATAGATGTCAGTATTAA-ACTACACAGTTCATTTAACTTTTG 402
                      *   ***    * * * * *   *** * *****  * *   ****  *  *   ** * 

consensus_3511#0      TATGAGCAAAGCAT--ACTCGTAAATAATGCTCTCTCA 449
consensus_3511#1      TATTTCCTGATTTNCCACACATGGCCAGGGTACCG--- 437
                      ***   *  *      ** * *    *  *  *