These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [GAGTGGGGTGCAGGAGTGGACGCCATGCAAGTGGCCCTCCAGTTGGAGAAAAGTGTCAACCAGTCCATCCTGGATCTGCACAAACTCGCCTCAAGCCATGAAGATGCCCAGATGGCTGACTACCTGGAAGACTTCTTAGAGGAGCAGGTCAGGTCAATCAAAGAGATTAGTGACTACATCACTAACTTGAAGCGTGTTGGCACAGGTCTGGGCGAGTACATGTTTGACAAGGAGTCACTCAGCTAGACACTCCAGGAAGGACACTCCCCCATGATGGACCTTTCTTCAAGCACCCTCATGGGTGGACCGTTATCTAGTTCAGAAACATCCTGGCCTTTTAATTAGATATTTTATGTCAAGTCTTTTAAGCTTCAACTGAATGTCAAAAAAAAAAAACTTTGTTTCTTAACAATANGAAGAAATGCTAAATTNTANCANTACACTAAAATATAAACATA] [+] EMBL CD134595 [GAGTGGGGTGCAGGAGTGGACGCCATGCAAGTGGCCCTCCAGTTGGAGAAAAGTGTCAACCAGTCCATCCTGGATCTGCACAAACTCGCCTCAAGCCATGAAGATGCCCAGATGGCTGACTACCTGGAAGACTTCTTAGAGGAGCAGGTCAGGTCAATCAAAGAGATTAGTGACTACATCACTAACTTGAAGCGTGTTGGCACAGGTCTGGGCGAGTACATGTTTGACAAGGAGTCACTCAGCTAGACACTCCAGGAAGGACACTCCCCCATGATGGACCTTTCTTCAAGCACCCTCATGGGTGGACCGTTATCTAGTTCAGAAACATCCTGGCCTTTTAATTAGATATTTTATGTCAAGTCTTTTAAGCTTCAACTGAATGTCAAAAAAAAAAAACTTTGTTTCTTAACAATANGAAGAAATGCTAAATTNTANCANTACACTAAAATATAAACATA] consensusID : consensus_3603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 151 fasta sequence [GCCTTTTAAATAGAAATTTTATGTCCAGTTTTTTAAGCTTCCACTGAAAGTCCAAAAAAAAAAACTTTGTTTCTTAACAATAGGAAGAAATGCTAAATTTTAGCAATACACTAGAATATAAACATATGTAGATATAACGTTAGAATGTCAT] [-] EMBL CD135686 [GCCTTTTAAATAGAAATTTTATGTCCAGTTTTTTAAGCTTCCACTGAAAGTCCAAAAAAAAAAACTTTGTTTCTTAACAATAGGAAGAAATGCTAAATTTTAGCAATACACTAGAATATAAACATATGTAGATATAACGTTAGAATGTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3603#0 GAGTGGGGTGCAGGAGTGGACGCCATGCAAGTGGCCCTCCAGTTGGAGAAAAGTGTCAAC 60 consensus_3603#1 ------------------------------------------------------------ consensus_3603#0 CAGTCCATCCTGGATCTGCACAAACTCGCCTCAAGCCATGAAGATGCCCAGATGGCTGAC 120 consensus_3603#1 ------------------------------------------------------------ consensus_3603#0 TACCTGGAAGACTTCTTAGAGGAGCAGGTCAGGTCAATCAAAGAGATTAGTGACTACATC 180 consensus_3603#1 ------------------------------------------------------------ consensus_3603#0 ACTAACTTGAAGCGTGTTGGCACAGGTCTGGGCGAGTACATGTTTGACAAGGAGTCACTC 240 consensus_3603#1 ------------------------------------------------------------ consensus_3603#0 AGCTAGACACTCCAGGAAGGACACTCCCCCATGATGGACCTTTCTTCAAGCACCCTCATG 300 consensus_3603#1 ------------------------------------------------------------ consensus_3603#0 GGTGGACCGTTATCTAGTTCAGAAACATCCTGGCCTTTTAATTAGATATTTTATGTCAAG 360 consensus_3603#1 --------------------------------GCCTTTTAAATAGAAATTTTATGTCCAG 28 ********* **** ********** ** consensus_3603#0 TCTTTTAAGCTTCAACTGAATGTCAAAAAAAAAAAACTTTGTTTCTTAACAATANGAAGA 420 consensus_3603#1 TTTTTTAAGCTTCCACTGAAAGTCCAAAAAAAAAAACTTTGTTTCTTAACAATAGGAAGA 88 * *********** ****** *** ***************************** ***** consensus_3603#0 AATGCTAAATTNTANCANTACACTAAAATATAAACATA---------------------- 458 consensus_3603#1 AATGCTAAATTTTAGCAATACACTAGAATATAAACATATGTAGATATAACGTTAGAATGT 148 *********** ** ** ******* ************ consensus_3603#0 --- consensus_3603#1 CAT 151 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||