These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [NAAGATGCATAGGTAGGTATATAAAGAAACTTTATACGATATTTCAATATTTTTTGCACGGATTCCATGGAGTGAGTTTCTCTTACATAAGTGATTTTATTGCACCAACTACGAATGGAATAACTTTCAGAAGATATTTTTCATTACTGTTATGAGAACCGACTAATGAACCGTTTGATTTGAAACGATGAAAACCTATCAAATGCATTTATCTGAAAAATCAGTTTTATCGTCGTTTAGTATTACTTTCTTGTTAGCAGATCGTTCACTGACCTGGCAATGTCAGATGAAACATAAATCCCAGAGTTTGGTGATCGCGTATATTCAGTAGTCAGTGTACTTTCAGGAGGATGTGGGGATAATTTACTGAACGGAACGACTACTGCTGATGAACAGTAGTAGATTTGAGGTCAGCATGGTATCTATTCACTCTTCAAGTAGTGTACATGCTTCGGTGTGCCACTGTCGAACCTTGGTGGGTAGGATATATTCATATGAGTGTGTTCAATCTACGTTTTAAACTCACAATGATTATTTGTTGTCCATTGATAATTTATTTTCATTAGTAACAACTGTCTGATTGAGGTAATACCACATT] [+] EMBL CD127272 [NAAGATGCATAGGTAGGTATATAAAGAAACTTTATACGATATTTCAATATTTTTTGCACGGATTCCATGGAGTGAGTTTCTCTTACATAAGTGATTTTATTGCACCAACTACGAATGGAATAACTTTCAGAAGATATTTTTCATTACTGTTATGAGAACCGACTAATGAACCGTTTGATTTGAAACGATGAAAACCTATCAAATGCATTTATCTGAAAAATCAGTTTTATCGTCGTTTAGTATTACTTTCTTGTTAGCAGATCGTTCACTGACCTGGCAATGTCAGATGAAACATAAATCCCAGAGTTTGGTGATCGCGTATATTCAGTAGTCAGTGTACTTTCAGGAGGATGTGGGGATAATTTACTGAACGGAACGACTACTGCTGATGAACAGTAGTAGATTTGAGGTCAGCATGGTATCTATTCACTCTTCAAGTAGTGTACATGCTTCGGTGTGCCACTGTCGAACCTTGGTGGGTAGGATATATTCATATGAGTGTGTTCAATCTACGTTTTAAACTCACAATGATTATTTGTTGTCCATTGATAATTTATTTTCATTAGTAACAACTGTCTGATTGAGGTAATACCACATT] consensusID : consensus_3706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [AATTTACTGAACGGAATGACTACTGCTGATGAACAGTAATAGATTTGAGGTCAGCATGGTATCTATTCACTCTTCAAGTAGTGTATACGTTTCGGTGTGCCAATATCAAACCTAATACCTTCAAGTTTCTGGGTGAGCAGGTTATGTTCATATGAGTGAGTTTTGTCTACGGTTTCAACTTTCAAGAATTATTTACTGTCCCCTCATCATTTATTTTCATTGGTAACGACTGTCTGATTGAGATAATACCACTTCCAGTTCGCCGTCACATATTGTGTTTAGTGAATAAAGGACTCATAACTTTTCAACAACTGATATCTCTGTGTATTACAACTAGACATACATGTGGAGTGTATAACTTAAATCATGTAATAGTCAACATCATTTATTAGAAAGTAAGTCACAA] [+] EMBL CD152357 [AATTTACTGAACGGAATGACTACTGCTGATGAACAGTAATAGATTTGAGGTCAGCATGGTATCTATTCACTCTTCAAGTAGTGTATACGTTTCGGTGTGCCAATATCAAACCTAATACCTTCAAGTTTCTGGGTGAGCAGGTTATGTTCATATGAGTGAGTTTTGTCTACGGTTTCAACTTTCAAGAATTATTTACTGTCCCCTCATCATTTATTTTCATTGGTAACGACTGTCTGATTGAGATAATACCACTTCCAGTTCGCCGTCACATATTGTGTTTAGTGAATAAAGGACTCATAACTTTTCAACAACTGATATCTCTGTGTATTACAACTAGACATACATGTGGAGTGTATAACTTAAATCATGTAATAGTCAACATCATTTATTAGAAAGTAAGTCACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3706#0 NAAGATGCATAGGTAGGTATATAAAGAAACTTTATACGATATTTCAATATTTTTTGCACG 60 consensus_3706#1 ------------------------------------------------------------ consensus_3706#0 GATTCCATGGAGTGAGTTTCTCTTACATAAGTGATTTTATTGCACCAACTACGAATGGAA 120 consensus_3706#1 ------------------------------------------------------------ consensus_3706#0 TAACTTTCAGAAGATATTTTTCATTACTGTTATGAGAACCGACTAATGAACCGTTTGATT 180 consensus_3706#1 ------------------------------------------------------------ consensus_3706#0 TGAAACGATGAAAACCTATCAAATGCATTTATCTGAAAAATCAGTTTTATCGTCGTTTAG 240 consensus_3706#1 ------------------------------------------------------------ consensus_3706#0 TATTACTTTCTTGTTAGCAGATCGTTCACTGACCTGGCAATGTCAGATGAAACATAAATC 300 consensus_3706#1 ------------------------------------------------------------ consensus_3706#0 CCAGAGTTTGGTGATCGCGTATATTCAGTAGTCAGTGTACTTTCAGGAGGATGTGGGGAT 360 consensus_3706#1 ------------------------------------------------------------ consensus_3706#0 AATTTACTGAACGGAACGACTACTGCTGATGAACAGTAGTAGATTTGAGGTCAGCATGGT 420 consensus_3706#1 AATTTACTGAACGGAATGACTACTGCTGATGAACAGTAATAGATTTGAGGTCAGCATGGT 60 **************** ********************* ********************* consensus_3706#0 ATCTATTCACTCTTCAAGTAGTGTACATGCTTCGGTGTGCCACTGTCGAACCTT------ 474 consensus_3706#1 ATCTATTCACTCTTCAAGTAGTGTATACGTTTCGGTGTGCCAATATCAAACCTAATACCT 120 ************************* * * ************ * ** ***** consensus_3706#0 -----------GGTGGGTAGGATATATTCATATGAGTGTGTTCAATCTACGTTTTAAACT 523 consensus_3706#1 TCAAGTTTCTGGGTGAGCAGGTTATGTTCATATGAGTGAGTTTTGTCTACGGTTTCAACT 180 **** * *** *** ************ *** ****** *** **** consensus_3706#0 CACAATGATTATTTGTTGTCCATTGATAATTTATTTTCATTAGTAACAACTGTCTGATTG 583 consensus_3706#1 TTCAAGAATTATTTACTGTCCCCTCATCATTTATTTTCATTGGTAACGACTGTCTGATTG 240 *** ******* ***** * ** ************* ***** ************ consensus_3706#0 AGGTAATACCACATT--------------------------------------------- 598 consensus_3706#1 AGATAATACCACTTCCAGTTCGCCGTCACATATTGTGTTTAGTGAATAAAGGACTCATAA 300 ** ********* * consensus_3706#0 ------------------------------------------------------------ consensus_3706#1 CTTTTCAACAACTGATATCTCTGTGTATTACAACTAGACATACATGTGGAGTGTATAACT 360 consensus_3706#0 ---------------------------------------------- consensus_3706#1 TAAATCATGTAATAGTCAACATCATTTATTAGAAAGTAAGTCACAA 406 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||