These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [AGTCTCGATGAGTGGCTTGAATTCCTTTGAACTCAATGATGAGGATATTCCTCTGCACTTCACATCAGAGAGCTCGTATTTAATTGTTGCAGAGGGGGAGCAGGTTTTACTTCCTTGCAAAACGAATGTTTTCTCTGAAGCGTTGGTATCTTGGTACAAAGATGATATTAGAATAGCTGAAAATCTTACTTTTTCTTTTCGTCTCCGGTCAGCTAGTCGCGAAGATGCTGGATATTATCACTGCGTAGTAAAAACTACTTATGGAGGGATTCGTAGCCAGAAAGTTAAGTTAGAGATAGGATATCTTGATCCACCATCCAAAATCAAAGCGCGTTCATTTATTGAAGTAACTCTAGATCAAGCTGTTATAATTTGGCCTGGCTCACTAGATCAAGATAAACGTAAGCAACCATTTCAACTGGAAAGACGAAATGGATTGTGGAAATCAGTATTCAACCCAATAGACGAAACAAACAAAGCTTTACCTCCTTCATATTATTTACAAGCAGTACCATTCCCACAAGCTATATGGACCATAAACAATGCC] [+] EMBL CD127293 [AGTCTCGATGAGTGGCTTGAATTCCTTTGAACTCAATGATGAGGATATTCCTCTGCACTTCACATCAGAGAGCTCGTATTTAATTGTTGCAGAGGGGGAGCAGGTTTTACTTCCTTGCAAAACGAATGTTTTCTCTGAAGCGTTGGTATCTTGGTACAAAGATGATATTAGAATAGCTGAAAATCTTACTTTTTCTTTTCGTCTCCGGTCAGCTAGTCGCGAAGATGCTGGATATTATCACTGCGTAGTAAAAACTACTTATGGAGGGATTCGTAGCCAGAAAGTTAAGTTAGAGATAGGATATCTTGATCCACCATCCAAAATCAAAGCGCGTTCATTTATTGAAGTAACTCTAGATCAAGCTGTTATAATTTGGCCTGGCTCACTAGATCAAGATAAACGTAAGCAACCATTTCAACTGGAAAGACGAAATGGATTGTGGAAATCAGTATTCAACCCAATAGACGAAACAAACAAAGCTTTACCTCCTTCATATTATTTACAAGCAGTACCATTCCCACAAGCTATATGGACCATAAACAATGCC] consensusID : consensus_3720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [AATTATCTGTACAAAAGCTGAATAAATGGGCCTGGCTCACTAGATCAAGATACCTGTCCGCAACCGTTTGATCTGGAATGACAAACAGGATTGTGAAAATCATTCTTCGACCGACTAGACGAAACAAACAAAGCTTAACCTCCTTCATATTATTTACAAGCAGTACCATTCCCACAAGCTATATGGACCATAAACAATGCCCCAATACCTAGTGCATTGAATATTTTTGTTAGCCAGTTGGAACAAGCTATAGTATTGCTTAATATTGATAAAGAAATGGATTCAAAAGTGATTAGGGCACGACTGATCAATGGCTATGGTAGAGCGAATAGTGAAGTATTCAGTCAGACACATATAATCCAAGTTAAAGATCCACCTTTAAATATGGCTACAAATTCCTTAGAT] [+] EMBL CD144659 [AATTATCTGTACAAAAGCTGAATAAATGGGCCTGGCTCACTAGATCAAGATACCTGTCCGCAACCGTTTGATCTGGAATGACAAACAGGATTGTGAAAATCATTCTTCGACCGACTAGACGAAACAAACAAAGCTTAACCTCCTTCATATTATTTACAAGCAGTACCATTCCCACAAGCTATATGGACCATAAACAATGCCCCAATACCTAGTGCATTGAATATTTTTGTTAGCCAGTTGGAACAAGCTATAGTATTGCTTAATATTGATAAAGAAATGGATTCAAAAGTGATTAGGGCACGACTGATCAATGGCTATGGTAGAGCGAATAGTGAAGTATTCAGTCAGACACATATAATCCAAGTTAAAGATCCACCTTTAAATATGGCTACAAATTCCTTAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3720#0 AGTCTCGATGAGTGGCTTGAATTCCTTTGAACTCAATGATGAGGATATTCCTCTGCACTT 60 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 CACATCAGAGAGCTCGTATTTAATTGTTGCAGAGGGGGAGCAGGTTTTACTTCCTTGCAA 120 consensus_3720#1 -----------------AATTATCTGT-ACAAAAGCTGAATAAATGGGCCTGGCTCACTA 42 * *** *** ** * * ** * * ** ** * * consensus_3720#0 AACGAATGT-TTTCTCTGAAGCGTTGGTATCTTGGTACAAAGATGATATTAGAATAGCTG 179 consensus_3720#1 GATCAAGATACCTGTCCGCAACCGTTTGATCTGGAATGACAAACAGGATTG-------TG 95 * ** * * ** * * * * **** * * * * *** ** consensus_3720#0 AAAATCTTACTTTTTCTTTTCGTCTCCGGTCAGCTAGTCGCGAAGATGCTGGATATTATC 239 consensus_3720#1 AAAATCAT--------------TCTTCGACCGACTAGACG-AAACAAACAAAGCTTAACC 140 ****** * *** ** * **** ** ** * * * * * consensus_3720#0 ACTGCGTAGTAAAAACTACTTATGGAGGGATTCGTAGCCAGAAAGTTAAGTTAGAGATAG 299 consensus_3720#1 TCC------TTCATATTATTTACAAGCAGTACCATTCCCACAA-GCTA---TATGGACCA 190 * * * * ** *** * * * *** ** * ** ** ** consensus_3720#0 GATATCTTGATCCACCATCCAAAATCAAAGCGCGTTCATTTATTGAAGTAACTCTAGATC 359 consensus_3720#1 TAAACAATGCCCCAATACCTAGTGC---ATTGAATATTTTTGTT--AGCCAGT-TGGAAC 244 * * ** *** * * * * * * *** ** ** * * * ** * consensus_3720#0 AAGCTGT--TATAATTTGGCCTGGCTCACTAGATCAAGATAAACGTAAGCAAC-CATTTC 416 consensus_3720#1 AAGCTATAGTATTGCTTAATATTGATAAAGAAATGGATTCAAAAGTGATTAGGGCACGAC 304 ***** * *** ** * * * * * ** * *** ** * * ** * consensus_3720#0 AACTGGAAAGACGAAATGGATTGTGGAAATCAGTATTCAACCCAATAGACGAAACAAACA 476 consensus_3720#1 TGATCAATGGCTATGGTAGAGCGAATAGTGAAGTATTCAGTCAGACACAT---ATAATCC 361 * * * * ** * * ******** * * * * * ** * consensus_3720#0 AAGCTTTACCTCCTTCATATTATTTACAAGCAG-TACCATTCCCACAAGCTATATGGACC 535 consensus_3720#1 AAGTTAAAGATCCACC------TTTAAATATGGCTACAAATTCCTTAGAT---------- 405 *** * * *** * **** * * *** * * ** * consensus_3720#0 ATAAACAATGCC 547 consensus_3720#1 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||