These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [CTGGAGGCCATCACAACTTTCTATGGTACGCTATTTGGCGTCTGCTGGTGCGAATGGGTACTGGGAACATGTGTTGTACGAACCTATGCTTTCTGGATTAAATTCAGATAATCGATCCAGCAAAGCATTTCATCCTCACAAAAAACCTTTACCTACTGATCCAGTGCATCCAACCAAAGCTGATTTTATACGAGAAAAGTATTTGTTTTTGGGATTTTTTAAGAGACCACGAAACGTTAACCATGATGATTTAAACCAGCAACTCCATGCCAGCGTAAGGACAGGAGTTTTAGAGACCAGTCTGTATTTACTTGCTTTGGGTGCAAATCCAAATTTTCTTCATCCAATCAAAGGCACAGCACCTATTCATGTTGCATGTCAATATGGTCAAATTGGTCAGGTAGAATTGCTGTTAGCTTATGGGGCAGATGTTTGTATTCGTAATTCATCTGGAAAAACTGTAATTGATGTTATTCAAAACTCAATTTTCGGTGATGTTCAAATTTTTGAATTAAGTGTTGAGGTGATCCAGAGAACTTCTCGCANAAGACAAGAAAGGCTCATGAAACGCT] [+] EMBL CD078855 [CTGGAGGCCATCACAACTTTCTATGGTACGCTATTTGGCGTCTGCTGGTGCGAATGGGTACTGGGAACATGTGTTGTACGAACCTATGCTTTCTGGATTAAATTCAGATAATCGATCCAGCAAAGCATTTCATCCTCACAAAAAACCTTTACCTACTGATCCAGTGCATCCAACCAAAGCTGATTTTATACGAGAAAAGTATTTGTTTTTGGGATTTTTTAAGAGACCACGAAACGTTAACCATGATGATTTAAACCAGCAACTCCATGCCAGCGTAAGGACAGGAGTTTTAGAGACCAGTCTGTATTTACTTGCTTTGGGTGCAAATCCAAATTTTCTTCATCCAATCAAAGGCACAGCACCTATTCATGTTGCATGTCAATATGGTCAAATTGGTCAGGTAGAATTGCTGTTAGCTTATGGGGCAGATGTTTGTATTCGTAATTCATCTGGAAAAACTGTAATTGATGTTATTCAAAACTCAATTTTCGGTGATGTTCAAATTTTTGAATTAAGTGTTGAGGTGATCCAGAGAACTTCTCGCANAAGACAAGAAAGGCTCATGAAACGCT] consensusID : consensus_3758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [CAAAATGGTCAAATTGGTCAGGTAAAATTGCTGTTAGCTTATGGGGCAAATGTTTGTATTCGTAATTCATTTGGAAAAACTGTAATTGATGTTATTCAAAACTCAATTTTGGGGGATGTTCAAATTTTTGAATTAAGTGTTGAGGTGATCCAAAGAATTTTTTGCAAAAAACAAAAAAGGGTCATGAAACGTTAAAAAGCATTTTATCCAATCAGTGTTCATTAAAAGTTTGGCCGGAAACATCCCGAAAGTGAAAAATCACATGTAGAGTTTTTGATTGGGTGAATAATACCCCGCTATCATGTTTAGTAGCATTCCAGGATTTTCAGGAAAACCCAAGGATTTTTGAAATACTATAAAAACCCTATATTTTTTGTAAATGAATGAACCTTTGGAGTAAAGTGT] [-] EMBL CD073316 [CAAAATGGTCAAATTGGTCAGGTAAAATTGCTGTTAGCTTATGGGGCAAATGTTTGTATTCGTAATTCATTTGGAAAAACTGTAATTGATGTTATTCAAAACTCAATTTTGGGGGATGTTCAAATTTTTGAATTAAGTGTTGAGGTGATCCAAAGAATTTTTTGCAAAAAACAAAAAAGGGTCATGAAACGTTAAAAAGCATTTTATCCAATCAGTGTTCATTAAAAGTTTGGCCGGAAACATCCCGAAAGTGAAAAATCACATGTAGAGTTTTTGATTGGGTGAATAATACCCCGCTATCATGTTTAGTAGCATTCCAGGATTTTCAGGAAAACCCAAGGATTTTTGAAATACTATAAAAACCCTATATTTTTTGTAAATGAATGAACCTTTGGAGTAAAGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3758#0 CTGGAGGCCATCACAACTTTCTATGGTACGCTATTTGGCGTCTGCTGGTGCGAATGGGTA 60 consensus_3758#1 ------------------------------------------------------------ consensus_3758#0 CTGGGAACATGTGTTGTACGAACCTATGCTTTCTGGATTAAATTCAGATAATCGATCCAG 120 consensus_3758#1 --------------------------------------CAAAATGGTCAAATTGGTCAGG 22 *** * *** * ** * consensus_3758#0 CAAA---GCATTTCATCCTCACAAAAAACCTTTACCTAC-TGATCCAGTGCATCCAACCA 176 consensus_3758#1 TAAAATTGCTGTTAGCTTATGGGGCAAATGTTTGTATTCGTAATTCATTTGGAAAAACTG 82 *** ** ** *** *** * * * ** ** * *** consensus_3758#0 AAGCTGATTTTATACGAGAAAAGTATTTGTTTTTGGGATTTTTTAAGAGACCACGAAACG 236 consensus_3758#1 TAATTGATGTTATTCAAAA------CTCAATTTTGGGGGATGTTCA-AATTTTTGAATTA 135 * **** **** * * * * ******* * ** * * *** consensus_3758#0 TTAACCATGATGATTTAAACCAGCAACTCCATGCCAGCGTAAGGACAGGAGTTTTAGAGA 296 consensus_3758#1 AGTGTTGAGGTGATCCAAA----GAATTTTTTGCAAAAAACAAAAAAGGGTCATGAAACG 191 * **** *** ** * *** * * * *** * * * consensus_3758#0 CCAGTCTGTATTTACTTGCTTTGGGTGCAAATCCAAATTTTCTTCATCCAATCAAAGGCA 356 consensus_3758#1 TTAAAAAGCATTT-TATCCAATCAGTGTTCATTAAAAGTTTGGCCG------GAAACATC 244 * * **** * * * *** ** *** *** * *** consensus_3758#0 CAGCACCTATTCATGTTGCATGTCAATATGGTCAAATTGGTCAGGTAGAATTGCTGTTAG 416 consensus_3758#1 CCGAAAGTGAA-AAATCACATGTAGAGTT--TTTGATTGGGTGAATAATACC-CCGCTAT 300 * * * * * * ***** * * * ***** ** * * * ** consensus_3758#0 CTTATGGGGCAG-ATGTTTGTATTCGTAATTCATCTGGAAAAACTGTAATTGATGTTATT 475 consensus_3758#1 CATGTTTAGTAGCATTCCAGGATTTTCAGGAAAACCCAAGGATTTTTGA--AATACTATA 358 * * * * ** ** * *** * * * * * * * * ** *** consensus_3758#0 CAAAACTCA-ATTTTCGGTGA-TGTTCAAATTTTTGAATTAA-GTGTTGAGGTGATCCAG 532 consensus_3758#1 AAAACCCTATATTTTTTGTAAATGAATGAACCTTTGGAGTAAAGTGT------------- 405 *** * * ***** ** * ** ** **** * *** **** consensus_3758#0 AGAACTTCTCGCANAAGACAAGAAAGGCTCATGAAACGCT 572 consensus_3758#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||