These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [AAGGTGTTTTGGGATAAAACAAAACACTTGAATCAAATAGGTAATAATAATCTTTTCAGTTGGCAGGGAACTAGGGCCCGTTAATCAACTTCTTAATAATTATTCATTGCCATATTTTTGACCCCCCTGTTTTTTTAACCAACCACTCATCCAGTCTTGACTTTAAGGTCTAATCCAGAAGGCAGTGTGGCAACTTCAAAATGTCCCCCTATGGTACCCAGTGACCAACAATAATTCCATACTCCTTTTGATTCTTTGGGATCCTGCACCCTAAATCCCCCATTGGTTTAAAATCAGGATTTTCCAACTCCTTTAGGGGGGTCATCCGTGCCCACTAACCCATTTTACCCCCCGGACATTCGGTTTTCATTCTGGTTTTTGCAAACAACAACCCACCAAAAAACAATCAGTTGGATTCCCTTGACAGGGG] [+] EMBL CD073344 [AAGGTGTTTTGGGATAAAACAAAACACTTGAATCAAATAGGTAATAATAATCTTTTCAGTTGGCAGGGAACTAGGGCCCGTTAATCAACTTCTTAATAATTATTCATTGCCATATTTTTGACCCCCCTGTTTTTTTAACCAACCACTCATCCAGTCTTGACTTTAAGGTCTAATCCAGAAGGCAGTGTGGCAACTTCAAAATGTCCCCCTATGGTACCCAGTGACCAACAATAATTCCATACTCCTTTTGATTCTTTGGGATCCTGCACCCTAAATCCCCCATTGGTTTAAAATCAGGATTTTCCAACTCCTTTAGGGGGGTCATCCGTGCCCACTAACCCATTTTACCCCCCGGACATTCGGTTTTCATTCTGGTTTTTGCAAACAACAACCCACCAAAAAACAATCAGTTGGATTCCCTTGACAGGGG] consensusID : consensus_3771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [GATTCAAGTGTTTTGTTTTATCCCAATACACCTTTGCATTGGATTTTGTTTGCAACCTATGCTTGTTATTGTTTTGCACAGGCGCTCGTCTACGGTAGAAATTTATCCTGTCTAAACGAACTGAAGTCACTGGCTAGTTGAAAGTTTGAGTGGTGTGGCCGAATACAAATTCTGAACCGGCATTTCTGAAACCTCGTGTGTCATTGAAGCTTTCCTCCTTCAAGAGTCGCACACTAATACAGATGGGAGAGTAGATGGGATCTGTTGTGTTGCTTCTTTGGAGAGTTTTGACGTCGACGTCTGTTGATTATGAGAGACTACTGGTATTAGAAGCTGTAGTGAAGTGGTACGTATTCACCCTCCACATCTATTGGAAGAGGTTGTCTC] [+] EMBL CD093459 [GATTCAAGTGTTTTGTTTTATCCCAATACACCTTTGCATTGGATTTTGTTTGCAACCTATGCTTGTTATTGTTTTGCACAGGCGCTCGTCTACGGTAGAAATTTATCCTGTCTAAACGAACTGAAGTCACTGGCTAGTTGAAAGTTTGAGTGGTGTGGCCGAATACAAATTCTGAACCGGCATTTCTGAAACCTCGTGTGTCATTGAAGCTTTCCTCCTTCAAGAGTCGCACACTAATACAGATGGGAGAGTAGATGGGATCTGTTGTGTTGCTTCTTTGGAGAGTTTTGACGTCGACGTCTGTTGATTATGAGAGACTACTGGTATTAGAAGCTGTAGTGAAGTGGTACGTATTCACCCTCCACATCTATTGGAAGAGGTTGTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3771#0 AAGGTGTTTTGGGATAAAACAAAACACTTGAATCAAATAGGTAATAATAATCTTTTCAGT 60 consensus_3771#1 -----------GATTCAAGTGTTTTGTTTTATCCCAATACACCTTTGCATTGGATTTTGT 49 * * ** ** * * **** * * * ** ** consensus_3771#0 TGGCAGGGAACTAGGGCCCGTTAATCAACTTCTTAATAATTATTCATTGCCATATTTTTG 120 consensus_3771#1 TTGCA----ACCTATGCTTGTTATTG---TTTTGCACAGGCGCTCGTC----TACGGTAG 98 * *** ** ** **** * ** * * * ** * ** * * consensus_3771#0 ACCCCCCTGTTTTTTTAACCAACCACTCATCCAGTCTTGACTTTAAGGTCTAATCCAGAA 180 consensus_3771#1 AAATTTATCCTGTCTAAACGAACTG--AAGTCACTGGCTAGTTGAAAGTTTGAGTGGTGT 156 * * * * * *** *** * ** * * ** ** ** * * consensus_3771#0 GGCAGTGTGGCAACTTCAAAATGTCCCCCTATGGTACCCAGTGACCAACAATAATTCCAT 240 consensus_3771#1 GGCCGAATA-CAAATTCTGAACCGGCATTTCTGAAACCTCGTG--TGTCATTGAAGCTTT 213 *** * * *** *** ** * * ** *** *** ** * * * * consensus_3771#0 ACTCCTTTTGATTCTTTGGGATCCTGCACCCTAAATCCCCCATTGGTTTAAAATCAGGAT 300 consensus_3771#1 CCTCCTTCAAGAGTCGCACACTAATACAGATGGGAGAGTAGATGGG------ATCTG--T 265 ****** * * ** * ** ** *** * * consensus_3771#0 TTTCCAACTCCTTTAGGGGGGT----CATCCGTGCCCACTAACCCATTTTACCCCCCGGA 356 consensus_3771#1 TGTGTTGCTTCTTTGGAGAGTTTTGACGTCGACGTCTGTTGATT-ATGAGAGACTACTGG 324 * * ** **** * * * * * ** * * * * ** * * * * consensus_3771#0 CATTCGGTTTTCATTCTGGTTTTTGCAAACAACAACCCACCAAAAAACAATCAGTTGGAT 416 consensus_3771#1 TATTAGAAGCT-GTAGTGAAGTG-GTACGTATTCACCCTCCACATC-TATTGGAAGAGGT 381 *** * * * ** * * * * **** *** * * * * * consensus_3771#0 TCCCTTGACAGGGG 430 consensus_3771#1 TGTCTC-------- 387 * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||