These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [GACAACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAATTTGTCGATAGTTGATTTAACATATGAGATAGAAGAAAAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGAAGTGGTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATCTGTCAGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAATCCATCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAGGCCACTGTCCTTTAGGGGATTCAGCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCATTTCCAGGTTCGCTGCAGTGTCGTCAAACAAGACTTTGACCACCTATTTCAGAATAGACTTGCTATATGTTGAGCTTGTTTCCATCTTCTGTCATACTGTGTCGTCAAGTCTGCTCCTTCTAATAGTAGTAGTTTGCTCGGTCTATTGCACATACAGGAC] [+] EMBL AI977020 [GACAACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAATTTGTCGATAGTTGATTTAACATATGAGATAGAAGAAAAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGAAGTGGTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATCTGTCAGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAATCCATCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAGGCCACTGTCCTTTAGGGGATTCAGCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCATTTCCAGGTTCGCTGCAGTGTCGTCAAACAAGACTTTGACCACCTATTTCAGAATAGACTTGCTATATGTTGAGCTTGTTTCCATCTTCTGTCATACTGTGTCGTCAAGTCTGCTCCTTCTAATAGTAGTAGTTTGCTCGGTCTATTGCACATACAGGAC] consensusID : consensus_3775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [ACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAAGTACGTTCCAACTAATAATAACATGGCCAGTTTGTCGATAGTTGATTTAACATATGAGATAGAAGAAAAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGAAGTGGTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATCTGTCAGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAATCCATCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAAGCCACTGTCCTCTAAGGGATTCAGCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCATTTCCAGGGTCGCTGCAGTGTCGTCAAA] [+] EMBL CD127457 [ACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAAGTACGTTCCAACTAATAATAACATGGCCAGTTTGTCGATAGTTGATTTAACATATGAGATAGAAGAAAAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGAAGTGGTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATCTGTCAGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAATCCATCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAAGCCACTGTCCTCTAAGGGATTCAGCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCATTTCCAGGGTCGCTGCAGTGTCGTCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3775#0 GACAACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAA--- 57 consensus_3775#1 ----ACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAAGTA 56 ***************************************************** consensus_3775#0 ---------------------------TTTGTCGATAGTTGATTTAACATATGAGATAGA 90 consensus_3775#1 CGTTCCAACTAATAATAACATGGCCAGTTTGTCGATAGTTGATTTAACATATGAGATAGA 116 ********************************* consensus_3775#0 AGAAAAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGA 150 consensus_3775#1 AGAAAAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGA 176 ************************************************************ consensus_3775#0 AGTGGTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATC 210 consensus_3775#1 AGTGGTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATC 236 ************************************************************ consensus_3775#0 TGTCAGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAA 270 consensus_3775#1 TGTCAGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAA 296 ************************************************************ consensus_3775#0 TCCATCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAGGCCACTGTCCTTTAGGGGA 330 consensus_3775#1 TCCATCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAAGCCACTGTCCTCTAAGGGA 356 **************************************** *********** ** **** consensus_3775#0 TTCAGCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCA 390 consensus_3775#1 TTCAGCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCA 416 ************************************************************ consensus_3775#0 TTTCCAGGTTCGCTGCAGTGTCGTCAAACAAGACTTTGACCACCTATTTCAGAATAGACT 450 consensus_3775#1 TTTCCAGGGTCGCTGCAGTGTCGTCAAA-------------------------------- 444 ******** ******************* consensus_3775#0 TGCTATATGTTGAGCTTGTTTCCATCTTCTGTCATACTGTGTCGTCAAGTCTGCTCCTTC 510 consensus_3775#1 ------------------------------------------------------------ consensus_3775#0 TAATAGTAGTAGTTTGCTCGGTCTATTGCACATACAGGAC 550 consensus_3775#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||