These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [AGACGACATGACGAGTAACCCGTAATTCCTAAATGTTTGTAGTCCTTACTTCAGTTACTGAAGTATTATCGCATGAGATAGCTGCTTTTTTAGTAATTAACGAGTAATGTTTGTAATGATTTATGTTCCAGAGACATTTCGGTCGACTTAAGTGAGGCGTTTCGACGCATAATATTGAGCAGGCGTTTTGGAAACTGGATTGAATTCGATGGTGTGTTTAAGGAGTTCCAAAAAACCACCTGTACGCATAACATTCACGGCGAAAGTAAACTGCTGAAGGACATGCGATTTAAATACAGTTTTGTGGTGTTATGAACTAGATGCAGGCACTTGCGAGTGCAATTGTCGAACATTTATGACTTGTCGATATCCTTGTCGTCATATACTACTGACATATGTAAAAAGACCAACTCTTACAGCTCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACGCATAACTTCCATTANTATACA] [+] EMBL CD189980 [AGACGACATGACGAGTAACCCGTAATTCCTAAATGTTTGTAGTCCTTACTTCAGTTACTGAAGTATTATCGCATGAGATAGCTGCTTTTTTAGTAATTAACGAGTAATGTTTGTAATGATTTATGTTCCAGAGACATTTCGGTCGACTTAAGTGAGGCGTTTCGACGCATAATATTGAGCAGGCGTTTTGGAAACTGGATTGAATTCGATGGTGTGTTTAAGGAGTTCCAAAAAACCACCTGTACGCATAACATTCACGGCGAAAGTAAACTGCTGAAGGACATGCGATTTAAATACAGTTTTGTGGTGTTATGAACTAGATGCAGGCACTTGCGAGTGCAATTGTCGAACATTTATGACTTGTCGATATCCTTGTCGTCATATACTACTGACATATGTAAAAAGACCAACTCTTACAGCTCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACGCATAACTTCCATTANTATACA] consensusID : consensus_384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [ATTAAATATGAACCAGTTTAGCTTGGAAGTGGAAGAATAAAACCGACTATGTCAAGGGATTTTGTTGAGAGTTTGACGTATGACAACATATCTGAAATAAGTTGTTGAGCTGACGATGTTTCCGTTTTACGGCGTTATATGTTTCTAATGATTACCATATTAATTTTAGGGCGCTTTAAAGTGAAGACAGATATGTCCGTTAACCGTACAACGTATGTTGCGGTATTCATGTCTTTAAGAAAGGCGAACTGGCAGTTAGAAACTTACGTGAAATACAATATATAGTGTTTTAGGGGCATAAGCACACCCATTCGGAAGCAAACCCAACTCGACACGGCCAGACGGTCGGNGGTTCCATTGTGGTATCTCATGAGCGTCGTGTTAGGCACCATAGGCATAACAACAGGCTGTGCTAAGAAATCTGTTTGTGTAGCCATGTTCTCTAGTGGTCGAACC] [+] EMBL CD148514 [ATTAAATATGAACCAGTTTAGCTTGGAAGTGGAAGAATAAAACCGACTATGTCAAGGGATTTTGTTGAGAGTTTGACGTATGACAACATATCTGAAATAAGTTGTTGAGCTGACGATGTTTCCGTTTTACGGCGTTATATGTTTCTAATGATTACCATATTAATTTTAGGGCGCTTTAAAGTGAAGACAGATATGTCCGTTAACCGTACAACGTATGTTGCGGTATTCATGTCTTTAAGAAAGGCGAACTGGCAGTTAGAAACTTACGTGAAATACAATATATAGTGTTTTAGGGGCATAAGCACACCCATTCGGAAGCAAACCCAACTCGACACGGCCAGACGGTCGGNGGTTCCATTGTGGTATCTCATGAGCGTCGTGTTAGGCACCATAGGCATAACAACAGGCTGTGCTAAGAAATCTGTTTGTGTAGCCATGTTCTCTAGTGGTCGAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_384#0 AGACGACATGACGAGTAACCCGTAATTCCTAAATGTTTGTAGTCCTTACTTCAGTTACTG 60 consensus_384#1 ---------------------ATTAAATATGAACCAGTTTAGCTTGGAAGTGGAAGAATA 39 * * * ** * *** * * * * consensus_384#0 AAGT--ATTATCGCATGAGATA--GCTGCTTTTTTAGTAATTAACGAGTAATGTTTGTAA 116 consensus_384#1 AAACCGACTATGTCAAGGGATTTTGTTGAGAGTTTGACGTATGACAA--CATATCTGAAA 97 ** * *** ** * *** * ** *** * ** * ** * ** ** consensus_384#0 TGATTTAT-GTTCCAGAGACATTTCGGTCGACTTAAGTGAGGCGTTTCGACGCATAATAT 175 consensus_384#1 TAAGTTGTTGAGCTGACGATGTTTCCGTTTTACGGCGTTATATGTTTCTAATGATTACCA 157 * * ** * * * ** **** ** ** * ***** * ** * consensus_384#0 TGAGCAGGCGTTTTGGAAACTGGATTGAATTCGATGGTGTGTTTAAGGAGTTCCAAAAAA 235 consensus_384#1 T-ATTAATTTTAGGGCGCTTTAAAGTGAAGACAGATATGTCCGTTAACCGTACAACGTAT 216 * * * * * * * **** * *** * * ** * * * consensus_384#0 CCACCTGTACGCATAACATTCACGGCGAAAGTAAACTG-CTGAAGGACATGCGATTTAAA 294 consensus_384#1 GTTGCGGTATTCATGTCTTTAAG---AAAGGCGAACTGGCAGTTAGAAACTTACGTGAAA 273 * *** *** * ** * ** * ***** * * ** * * *** consensus_384#0 TACAGTTT-TGTGGTGTTATGAAC-TAGATGCAGGCACTTGCGAGTGCAATTGTCG-AAC 351 consensus_384#1 TACAATATATAGTGTTTTAGGGGCATAAGCACACCCATTCGGAAGCAAACCCAACTCGAC 333 **** * * * ** *** * * ** ** ** * * ** * * ** consensus_384#0 ATTTATGACTTGTCGATATCCTTGTCGTCATATACTACTGACATATGTAAAAAGACCAAC 411 consensus_384#1 ACGGCCAGACGGTCGGNGGTTCCATTGTGGTATCTCATGAGCGTCGTGTTAGGCACCA-- 391 * **** * ** *** * * * * **** consensus_384#0 TCTTACAGCTCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACGCATAA 471 consensus_384#1 ---TAGGCATAACAACAGGCT-GTGCTAAGAAATCTGT-----TTGTGTAGC---CATGT 439 ** * * *** ** * * * * * * ** ** * *** consensus_384#0 CTTCCATTANTATACA- 487 consensus_384#1 TCTCTAGTGGTCGAACC 456 ** * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||