cluster # 3850

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Schistosoma mansoni
cluster # 3850 cluster # 3850 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3850#0 length = 354 sequences # 1

consensus_3850#1 length = 240 sequences # 1

consensusID : consensus_3850#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence

                              [CAAATGCATTAAAAATGAACCGTCTGGCTGATGAAGTTTCCGCATCCAGTCAGCCAGTGCATCCCGATTAATAATATCTAGGGCATCTCGGCGACATAAAGAAGCCAAACAATTAACTGCACCATATGAAGTTGCAAGGTGTGCAAACTGATAAGGCCCTCCACCAAAACCACCGTCCGGATGCTGAGAGGATGCTAGGAACGATATTAATTTTACCGAGGTTTCTTCAGGGATTACAAAGTTCAGCAGTCTTAAAGCATGTACAATCCAATAAGCCAACCACGGTTGGCTTGCATCTAAATGTTCCAAACTCATAGGCAGATTGAGAAGTCGCTTGTTGAGATAGTTTACGTG]

[+] EMBL CD195484             [CAAATGCATTAAAAATGAACCGTCTGGCTGATGAAGTTTCCGCATCCAGTCAGCCAGTGCATCCCGATTAATAATATCTAGGGCATCTCGGCGACATAAAGAAGCCAAACAATTAACTGCACCATATGAAGTTGCAAGGTGTGCAAACTGATAAGGCCCTCCACCAAAACCACCGTCCGGATGCTGAGAGGATGCTAGGAACGATATTAATTTTACCGAGGTTTCTTCAGGGATTACAAAGTTCAGCAGTCTTAAAGCATGTACAATCCAATAAGCCAACCACGGTTGGCTTGCATCTAAATGTTCCAAACTCATAGGCAGATTGAGAAGTCGCTTGTTGAGATAGTTTACGTG]




>consensus_3850#0
CAAATGCATTAAAAATGAACCGTCTGGCTGATGAAGTTTCCGCATCCAGTCAGCCAGTGC
ATCCCGATTAATAATATCTAGGGCATCTCGGCGACATAAAGAAGCCAAACAATTAACTGC
ACCATATGAAGTTGCAAGGTGTGCAAACTGATAAGGCCCTCCACCAAAACCACCGTCCGG
ATGCTGAGAGGATGCTAGGAACGATATTAATTTTACCGAGGTTTCTTCAGGGATTACAAA
GTTCAGCAGTCTTAAAGCATGTACAATCCAATAAGCCAACCACGGTTGGCTTGCATCTAA
ATGTTCCAAACTCATAGGCAGATTGAGAAGTCGCTTGTTGAGATAGTTTACGTG

consensusID : consensus_3850#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence

                              [ACTAGCCACCCACTCTGCAGTAGATTCAAACAAATCAGGATATTTTTTAAGCAACCCAGTAAGTTTTGCAACTGCTGTGGCACAGTAGGCACCTCGAACATCAGCTTCACCTCCCAAAATGCATAAAAAATGAAACCGTCTGGCTGATGAAGTTTCCGCATCCAGTCCGCCAGTGCATCCCGATTAAATAAATATCTAGGGCATCTCGGCGAACATAAAGATGCCAAAACAAATTAAACT]

[+] EMBL CD119995             [ACTAGCCACCCACTCTGCAGTAGATTCAAACAAATCAGGATATTTTTTAAGCAACCCAGTAAGTTTTGCAACTGCTGTGGCACAGTAGGCACCTCGAACATCAGCTTCACCTCCCAAAATGCATAAAAAATGAAACCGTCTGGCTGATGAAGTTTCCGCATCCAGTCCGCCAGTGCATCCCGATTAAATAAATATCTAGGGCATCTCGGCGAACATAAAGATGCCAAAACAAATTAAACT]




>consensus_3850#1
ACTAGCCACCCACTCTGCAGTAGATTCAAACAAATCAGGATATTTTTTAAGCAACCCAGT
AAGTTTTGCAACTGCTGTGGCACAGTAGGCACCTCGAACATCAGCTTCACCTCCCAAAAT
GCATAAAAAATGAAACCGTCTGGCTGATGAAGTTTCCGCATCCAGTCCGCCAGTGCATCC
CGATTAAATAAATATCTAGGGCATCTCGGCGAACATAAAGATGCCAAAACAAATTAAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3850#0      CAAATGCATTAAAAATGAACCGTCTGGCTGATGAAGTTTCCGCATCCAGTCAGCCAGTGC 60
consensus_3850#1      ------------------------------------------------------------
                                                                                  

consensus_3850#0      ATCCCGATTAATAATATCTAGGGCATCTCGGCGACATAAAGAAGCCAAACAATTAACTGC 120
consensus_3850#1      --------------------------------ACTAGCCACCCACTCTGCAGTAGATTCA 28
                                                         *   *    *    ** *  * *  

consensus_3850#0      ACCATATGAAGTTGCAAGGTGTGCAAACTGATAAGGCCCTCCACCAAAACCACCGTCCGG 180
consensus_3850#1      AACAAATCAGGATATTTTTTAAGCAACCCAGTAAGTTTTGC------AACTGCTGTG--- 79
                      * ** ** * * *      *  **** *   ****     *      ***  * **    

consensus_3850#0      ATGCTGAGAGGATGCTAGGAACGATATTAATTTTACCGAGGTTTCTTCAGGGATTACAAA 240
consensus_3850#1      --GCACAGTAGGCACCTCGAACATCAGCTTCACCTCCCAAAATGCATAAAAAATGAAACC 137
                        **  **  *   *   ****   *         ** *   * * * *   ** * *  

consensus_3850#0      GTTCAGCAGTCTTAAAGCATGTACAATCCAATAAGCCAACCACGGTTGGCTTGCATCTAA 300
consensus_3850#1      GTCTGGCTG--ATGAAGTTTCCGCA-TCCAGTCCGCCAGT-GCATCCCGATTAAAT--AA 191
                      **   ** *   * ***  *   ** **** *  ****    *     * **  **  **

consensus_3850#0      ATGTTCCAAACTCATAGGCAGATTGAGAAGTCGCTTGTTGAGATAGTTTACGTG 354
consensus_3850#1      ATATCTAGGGCATCTCGGCGAACATAAAGATGCCAAAACAAATTAAACT----- 240
                      ** *      *   * ***  *   * *  *  *      *  **   *