These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3925#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [ATCATTTGATTAAATATATGTGTAAGTGGAACAAAAACAAAAGAAAAGTGAAGCAATCATAAGTAATTTTGTGGAATATTTGAAACAAATAAATCAGAGACCCATATATTAACCTTTTGCAAAACACATTTAACGGGGGAGCATCAATAGTGCGAAAGGTGTAATAAATAAACTGACAGATGCTGACATCGACACTAACCTAGCCGTAATACCGCTTGTGTGCAAAAAAATATGTTGTAGCAAACTGAATAAACCAGCCATGGCACTTGAAATACCATTCAATGTGCCGAAATAGCGTATTGTGAAACCCGTCATTAACTACCTGACATACGCACTTAACATTATTGATCTAACAATAACTGAACAAACAAATACTGTGTA] [+] EMBL CD178794 [ATCATTTGATTAAATATATGTGTAAGTGGAACAAAAACAAAAGAAAAGTGAAGCAATCATAAGTAATTTTGTGGAATATTTGAAACAAATAAATCAGAGACCCATATATTAACCTTTTGCAAAACACATTTAACGGGGGAGCATCAATAGTGCGAAAGGTGTAATAAATAAACTGACAGATGCTGACATCGACACTAACCTAGCCGTAATACCGCTTGTGTGCAAAAAAATATGTTGTAGCAAACTGAATAAACCAGCCATGGCACTTGAAATACCATTCAATGTGCCGAAATAGCGTATTGTGAAACCCGTCATTAACTACCTGACATACGCACTTAACATTATTGATCTAACAATAACTGAACAAACAAATACTGTGTA] consensusID : consensus_3925#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [TAGTACCGCTTGTGTGCAGAAAAATATGTTGTAGCAGACTGAATAAACCAGCCATGGCACTTGAAATACCATTCAATGTGCCGAAATAACGTATTGGGAAACCTGTCAATAAATAACTGACAAACGCACTAAACATTATTGATCGGAACAATAACTAAACACAACACAAAATGTGTATAATGGCANNNNNNGCGCGTGTAGCAATACTCTTGCATTAAAATAACAGCAAATATGCCCATTATTGTGAGTGCAGGCACTAAACCACAAATGTGATTATAATCATTTCTCTATTA] [-] EMBL CD183470 [TAGTACCGCTTGTGTGCAGAAAAATATGTTGTAGCAGACTGAATAAACCAGCCATGGCACTTGAAATACCATTCAATGTGCCGAAATAACGTATTGGGAAACCTGTCAATAAATAACTGACAAACGCACTAAACATTATTGATCGGAACAATAACTAAACACAACACAAAATGTGTATAATGGCANNNNNNGCGCGTGTAGCAATACTCTTGCATTAAAATAACAGCAAATATGCCCATTATTGTGAGTGCAGGCACTAAACCACAAATGTGATTATAATCATTTCTCTATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3925#0 ATCATTTGATTAAATATATGTGTAAGTGGAACAAAAACAAAAGAAAAGTGAAGCAATCAT 60 consensus_3925#1 ---------------------------------------TAGTACCGCTTGTGTGCAGAA 21 * * * * * consensus_3925#0 AAGTAATTTTGTGGAATATTTGAAACAAATAAATCAGAGACCCATATATTAACCTTTTGC 120 consensus_3925#1 AAATA-TGTTGTAGCAGACT--GAATAAACCAGCCATGGCACTTGAAAT--ACCATTCAA 76 ** ** * **** * * * * ** *** * ** * * * ** *** ** consensus_3925#0 AAAACACATTTAACGGGGGAGCATCAATAGTGCGAAAGGTGTAATAAATAAACTGACAGA 180 consensus_3925#1 TGTGCCGAAATAACGTATTGGGAAACCTGTCAATAAATAACTGACAAACGCACTAAACAT 136 * * ***** * * * *** * * *** *** * consensus_3925#0 TGCTGACATCGACACTAACCTAGCCGTAATACCGCTTGTGTGCAAAAAAATATGTTGTAG 240 consensus_3925#1 TATTGATCGGAACAATAAC-TAAACACAACACAAAATGTGTATAATGGCANNNNNNGCG- 194 * *** *** **** ** * ** ** ***** ** * * consensus_3925#0 CAAACTGAATAAACCAGCCATGGCACTTGAAATACCATTCAATGTGCCGAAATAGCGTAT 300 consensus_3925#1 -----CGTGTAGCAATACTCTTGCA-TTAAAATAACAGCAAATATGCCCAT------TAT 242 * ** * * *** ** ***** ** *** **** * *** consensus_3925#0 TGTGAAACCCGTCATTAACTACCTGACATACGCACTTAACATTATTGATCTAACAATAAC 360 consensus_3925#1 TGTGAGTGCAGGCACTAA--ACC--ACAAATGTGATTATAATCATTTCTCTATTA----- 293 ***** * * ** *** *** *** * * *** ** *** **** * consensus_3925#0 TGAACAAACAAATACTGTGTA 381 consensus_3925#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||