These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [CCACTATTCACGGCTCGGTCGTACACCGACACGCTCATGCAATCGTGACTGCTCTAGGATTGTGCTGTGGATGTCATGCAAGCGCGTCACAGTCCAGATTGCTATCTGAAGCTAATGCAATGGACACGATCCCTGATGCAACCTGTTCTACCACTTCACTTTCTGCGTCCGTTTCAATTTGCCCCTATGTTTCACCGAACACTTCGACTGCCGACTCGGGTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTGCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTACTGCGTCCGTTTCAACTTGCGC] [+] EMBL CD166537 [CCACTATTCACGGCTCGGTCGTACACCGACACGCTCATGCAATCGTGACTGCTCTAGGATTGTGCTGTGGATGTCATGCAAGCGCGTCACAGTCCAGATTGCTATCTGAAGCTAATGCAATGGACACGATCCCTGATGCAACCTGTTCTACCACTTCACTTTCTGCGTCCGTTTCAATTTGCCCCTATGTTTCACCGAACACTTCGACTGCCGACTCGGGTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTGCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTACTGCGTCCGTTTCAACTTGCGC] consensusID : consensus_393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [GCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACGCAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAGGCACAGATTGCAGTCAGGCACAGATTGCAGTCGAGGCACAGATTGCAGTCAGGCACAGATTGCAGTCGGGCACAGATTGC] [+] EMBL CD200466 [GCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACGCAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAGGCACAGATTGCAGTCAGGCACAGATTGCAGTCGAGGCACAGATTGCAGTCAGGCACAGATTGCAGTCGGGCACAGATTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_393#0 CCACTATTCACGGCTCGGTCGTACACCGACACGCTCATGCAATCGTGACTGCTCTAGGAT 60 consensus_393#1 ------------------------------------------------------------ consensus_393#0 TGTGCTGTGGATGTCATGCAAGCGCGTCACAGTCCAGATTGCTATCTGAAGCTAATGCAA 120 consensus_393#1 --------GCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGA---CTGGAGCGAACGCA- 48 * * ********* *** * **** * * *** *** ** *** consensus_393#0 TGGACACGATCCCTGATGCAACCTGTTCTACCACTTCACTTTCTGCGTCCGTTTCAATTT 180 consensus_393#1 --GACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTT 106 ***** * *** ********************************* ***** ** consensus_393#0 GCCCCTATGTTTCACCGAACACTTCGACTGCCGACTCGGGTTCCGTCTCACCTTCAAATA 240 consensus_393#1 GCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATA 166 ***** **** **************************** ******************** consensus_393#0 CGCCTTCACCAACTTCACCATATTGCGCCTCCATCTCACCGACACGCTCAACCAATCGTT 300 consensus_393#1 CGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTT 226 ************************ *********************************** consensus_393#0 CCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGA 360 consensus_393#1 CCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGA 286 ************************************************************ consensus_393#0 A-CACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTACTGC-GTCCGTTTC 418 consensus_393#1 GGCACAGAT-TGCAGTCAGGCACAGATTG--CAGTCGAGGCACAGATTGCAGTCAGGCAC 343 ****** * ** * ** ** * * *** * *** *** * * consensus_393#0 AACTTGCGC--------------- 427 consensus_393#1 AGATTGCAGTCGGGCACAGATTGC 367 * **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||