These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4057#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [TTAAATCTGAATTGAAAACTCATGTTAATCGTTCTGATGCCTTAGTAGGGGAAATGAATCGTTTGACTAAAGTTGTAAGTTCATTATCGGAAGAACTGAACCATGCTAATAATCGAACTAATGAAGTGCAAGGTCAATTGCATGATTTACAAGTTGATCTTGTTCATACACAGAATGAATTACAATTGAAGGAAGATGAAGTTCAGCGTCAACGAACTAATGTTGAACAGTTAAGATTACAATTATGTGAAGAAAATACACAAACAGAGAGATTTCGTACGGAACTTGAAACATTGCAATCAGCTAAGGTTCAAGCTGAAAATGAATTATCATCATCAAATAATTTAATTCAAGAATTAAAAATATCATTAACAAATGAAAAGAATCGAGCTCAGTCGTTAAAAATTGAATTGGATCAATTATATGACCAAATTAGGAAGAACACTTATCAAACTACTCCAACGCCAAATAATAATAATAATAATGCTATTGGTGGAAATATGACTACAACTAATGAAAATAAAGCACCTAATGATTGGTCATCANATCTTAATCCACGTGTCTATGAAGCGATAA] [+] EMBL AI977326 [TTAAATCTGAATTGAAAACTCATGTTAATCGTTCTGATGCCTTAGTAGGGGAAATGAATCGTTTGACTAAAGTTGTAAGTTCATTATCGGAAGAACTGAACCATGCTAATAATCGAACTAATGAAGTGCAAGGTCAATTGCATGATTTACAAGTTGATCTTGTTCATACACAGAATGAATTACAATTGAAGGAAGATGAAGTTCAGCGTCAACGAACTAATGTTGAACAGTTAAGATTACAATTATGTGAAGAAAATACACAAACAGAGAGATTTCGTACGGAACTTGAAACATTGCAATCAGCTAAGGTTCAAGCTGAAAATGAATTATCATCATCAAATAATTTAATTCAAGAATTAAAAATATCATTAACAAATGAAAAGAATCGAGCTCAGTCGTTAAAAATTGAATTGGATCAATTATATGACCAAATTAGGAAGAACACTTATCAAACTACTCCAACGCCAAATAATAATAATAATAATGCTATTGGTGGAAATATGACTACAACTAATGAAAATAAAGCACCTAATGATTGGTCATCANATCTTAATCCACGTGTCTATGAAGCGATAA] consensusID : consensus_4057#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [GGTACTGACTCAGCATCCTTAATTTGAAGTACCTAATACTCGAATGTTTGAATATCTTTTCTTCAAACCCCAGTGAAGTCATGAATGCTCACTACTGTGTAGTTCAGTGTTAGAATAAAACATGTGTTAAGTGCTTCTTAGTTTTATTGGTTATCTGACAAAGGTTAATTTTTAATGTCAACTTGGTGAATTGTCCATTTCCCGTAAGGTCAAATGAAAACACTGTTTATTGCTTTTTTTGTTTGAATAAATTCTTCGTTTTTATTTTGAAAAAAAATATAGTTTTGCCCCTTTCACTTGTTTCCCCCCTCACGGTTTTTACTTTGCCAGAACTACTCCAACGCCAAATAATAATAATAATGCTATCGGTGGAAATATGACTACAACTAATGAAAATAAAGCACCTAATGATTATTCATCAAATCTTAATCCACGTGTCTATGAAGCGATAAATC] [-] EMBL CD179779 [GGTACTGACTCAGCATCCTTAATTTGAAGTACCTAATACTCGAATGTTTGAATATCTTTTCTTCAAACCCCAGTGAAGTCATGAATGCTCACTACTGTGTAGTTCAGTGTTAGAATAAAACATGTGTTAAGTGCTTCTTAGTTTTATTGGTTATCTGACAAAGGTTAATTTTTAATGTCAACTTGGTGAATTGTCCATTTCCCGTAAGGTCAAATGAAAACACTGTTTATTGCTTTTTTTGTTTGAATAAATTCTTCGTTTTTATTTTGAAAAAAAATATAGTTTTGCCCCTTTCACTTGTTTCCCCCCTCACGGTTTTTACTTTGCCAGAACTACTCCAACGCCAAATAATAATAATAATGCTATCGGTGGAAATATGACTACAACTAATGAAAATAAAGCACCTAATGATTATTCATCAAATCTTAATCCACGTGTCTATGAAGCGATAAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4057#0 TTAAATCTGAATTGAAAACTCATGTTAATCGTTCTGATGCCTTAGTAGGGGAAATGAATC 60 consensus_4057#1 ------------------------------------------------------------ consensus_4057#0 GTTTGACTAAAGTTGTAAGTTCATTATCGGAAGAACTGAACCATGCTAATAATCGAACTA 120 consensus_4057#1 -------------------------------GGTACTGACTCA-GC--ATCCTTAATT-- 24 * ***** ** ** ** * * consensus_4057#0 ATGAAGTGCAAGGTCAATTGCATGATTTACAAGTTGATCTTGTTCATACACAGAATGAAT 180 consensus_4057#1 -TGAAGTACCTAAT-ACTCGAATGTTT---GAATATCTTTTCTTCAAACCCCAGTGAAGT 79 ****** * * * * * *** ** * * * ** **** ** * * * consensus_4057#0 TACAATTGA--AGGAAGATGAAGTTCAGCGTCAACGAACTAATGTTGAACAGTTAAGATT 238 consensus_4057#1 CATGAATGCTCACTACTGTGTAGTTCAGTGTTA--GAATAAAACATGTGTTAAGTGCTTC 137 * * ** * * ** ******* ** * *** ** ** * consensus_4057#0 ACAATTATGTGAAGAAAATACACAAACAGAGAGATTTCGTACGGAACTTGAAACATTGCA 298 consensus_4057#1 TTAGTTTTATTGGTTATCTG-ACAAAGGTTAATTTTTAATGTC-AACTTGGTGAATTGT- 194 * ** * * * * ***** * *** * ****** **** consensus_4057#0 ATCAGCTAAGGTTCAAGCTGAAAATGAATTATCATCATCAAATAATTTAATTCAAGAATT 358 consensus_4057#1 -CCATTTCCCGT--AAGGTCAAA-TGAA--AACACTGTTTATTGCTTTTTTTGTTTGAAT 248 ** * ** *** * *** **** * ** * * * *** ** * * consensus_4057#0 AAAAATATCATTAACAAAT--GAAAAGAATCGAGCTCAGTCGTTAAAAATTGAATTGGAT 416 consensus_4057#1 AAATTCTTCGTTTTTATTTTGAAAAAAAATATAGTTTTGCCCCTTTCACTTG--TTTCCC 306 *** ** ** * * **** *** ** * * * * * *** ** consensus_4057#0 CAATTATATGACCAAATTAGGAAGAACACTTATCAAACTACTCCAACGCCAAATAATAAT 476 consensus_4057#1 CCCTCACGGTTTTTACTTTGCCAGAAC-----------TACTCCAACGCCAAATAATAAT 355 * * * * ** * ***** ********************** consensus_4057#0 AATAATAATGCTATTGGTGGAAATATGACTACAACTAATGAAAATAAAGCACCTAATGAT 536 consensus_4057#1 AATAAT---GCTATCGGTGGAAATATGACTACAACTAATGAAAATAAAGCACCTAATGAT 412 ****** ***** ********************************************* consensus_4057#0 TGGTCATCANATCTTAATCCACGTGTCTATGAAGCGATAA--- 576 consensus_4057#1 TATTCATCAAATCTTAATCCACGTGTCTATGAAGCGATAAATC 455 * ****** ****************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||