These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [CACTACATCCTAAATCTTCGTTTTTTTCGGTACGAAGTAATCGGCTCCAATGTCTGATGACCACTCAAATCAACTCTCACGACTATTTTACCCTATAAATGAACGTGTCGGCTTGTCGATTGGTGTTATATCTGGACACCAAAGCAAGCACAAACGGAAACATTTAGTTTTTACAATTTCACTAACTAAACCTACGAGCATTCAGGTCTATCTCGTCAAGATTACGGATAAAAACGAAATTAAGAAGGTGCAAGTATGCAACGCGAAAAATCTGAAAAAAATTGACTGCAGAGATACAAAAACTCAACCTAGCTATGAATTGCAGATAATTACGGAAAATAAGATATGGGTATTTAATGCTTTAAAATTAGAAGAAAAAAGACATTTTATCAGTTCATTTTGTCGTACACTTGCAACACTTCTACCACATGTAATCAAAGATATAGAATTAGTCAATTTCCCACAAGATAAAATTTCTCCACTTAGCCAAAATGAAACATTGGATGCTTTGCTTAA] [+] EMBL CD154695 [CACTACATCCTAAATCTTCGTTTTTTTCGGTACGAAGTAATCGGCTCCAATGTCTGATGACCACTCAAATCAACTCTCACGACTATTTTACCCTATAAATGAACGTGTCGGCTTGTCGATTGGTGTTATATCTGGACACCAAAGCAAGCACAAACGGAAACATTTAGTTTTTACAATTTCACTAACTAAACCTACGAGCATTCAGGTCTATCTCGTCAAGATTACGGATAAAAACGAAATTAAGAAGGTGCAAGTATGCAACGCGAAAAATCTGAAAAAAATTGACTGCAGAGATACAAAAACTCAACCTAGCTATGAATTGCAGATAATTACGGAAAATAAGATATGGGTATTTAATGCTTTAAAATTAGAAGAAAAAAGACATTTTATCAGTTCATTTTGTCGTACACTTGCAACACTTCTACCACATGTAATCAAAGATATAGAATTAGTCAATTTCCCACAAGATAAAATTTCTCCACTTAGCCAAAATGAAACATTGGATGCTTTGCTTAA] consensusID : consensus_4080#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [ACTTCGTACCGAAAAAAACGAAGATTTAGGATGTAGTGGTTTGCGTGTGGCCGGAAGGTATTTATAAACTAGGGGAGCATTCAGAGTAGCGTAGGCACGGAGGGATTTAGTGACAAATGCAATCAACAACAATGAGAAACAACACAAGCCACAGATAAAACAATCTTGGAACCGAAACCAGAAGTATACAGTTCTAATGCGCTACACTACTAATAAGTTTGGCGCTACGCAACGCAAAC] [+] EMBL CD159210 [ACTTCGTACCGAAAAAAACGAAGATTTAGGATGTAGTGGTTTGCGTGTGGCCGGAAGGTATTTATAAACTAGGGGAGCATTCAGAGTAGCGTAGGCACGGAGGGATTTAGTGACAAATGCAATCAACAACAATGAGAAACAACACAAGCCACAGATAAAACAATCTTGGAACCGAAACCAGAAGTATACAGTTCTAATGCGCTACACTACTAATAAGTTTGGCGCTACGCAACGCAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4080#0 CACTACATCCTAAATCTTCGTTTTTTTCGGTACGAAGTAATCGGCTCCAATGTCTGATGA 60 consensus_4080#1 --------------ACTTCGTACCGAAAAAAACGAAGATTTAGGATGTAGTGGTTTGCGT 46 ****** ****** * ** * * ** * * consensus_4080#0 CCACTCAAATCAACTCTCACGACTATTTTACCCTATAAATGAACGTGTCGGCTTGTCGAT 120 consensus_4080#1 GTGGCCGGAAGGTATTTATAAACTAGGGGAGCATTCAGAGTAGCGTAGGCACGGAGGGAT 106 * * * * **** * * * * * * *** * *** consensus_4080#0 T-GGTGTTATATCTGGACACCAA-AGCAAGCACAAACGGAAACATTTAGTTTTTACAATT 178 consensus_4080#1 TTAGTGACAAATGCAATCAACAACAATGAGAAACAACACAAGC-CACAGATAAAACAATC 165 * *** * ** ** *** * ** * *** ** * ** * ***** consensus_4080#0 TCACTAACTAAACCTACGAGCATTCAGGTCTATCTCGTCAAGATTACGGATAAAAACGAA 238 consensus_4080#1 TTGG-AACCGAAACCAGAAGTATACAGTTCTAATGCGCTAC-ACTACTAATAAGTTTGGC 223 * *** ** * * ** ** *** **** ** * * *** **** * consensus_4080#0 ATTAAGAAGGTGCAAGTATGCAACGCGAAAAATCTGAAAAAAATTGACTGCAGAGATACA 298 consensus_4080#1 GCTACGCAA-CGCAAAC------------------------------------------- 239 ** * * **** consensus_4080#0 AAAACTCAACCTAGCTATGAATTGCAGATAATTACGGAAAATAAGATATGGGTATTTAAT 358 consensus_4080#1 ------------------------------------------------------------ consensus_4080#0 GCTTTAAAATTAGAAGAAAAAAGACATTTTATCAGTTCATTTTGTCGTACACTTGCAACA 418 consensus_4080#1 ------------------------------------------------------------ consensus_4080#0 CTTCTACCACATGTAATCAAAGATATAGAATTAGTCAATTTCCCACAAGATAAAATTTCT 478 consensus_4080#1 ------------------------------------------------------------ consensus_4080#0 CCACTTAGCCAAAATGAAACATTGGATGCTTTGCTTAA 516 consensus_4080#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||