These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4112#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 871 fasta sequence [CTTCGGGGCCAAAATTCGGCACGAGGCGTATAACTAAATCGCAATTATATTACTTCTAAAGTTATTCATTTTATGATATACTTGTAACTAAAGTTTTCTTAATGTCCTCTCTTTTATTAATCTTTTTGTTTAGAAACAGATTAAACCATCTGCGGAAGTTTGTACGTATAACATAAATTGCCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAGCTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAAGTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATCATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGTGGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGATATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATTTATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATTTGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAG-AAATGAACGCTGTATTCCGGCAACCTATCGGCTGTTATATTTTATTGGATGGAAACCTGATCCTTCTCAAGTAAACCACCATTGTTCGTTATGTGTTGACTGAAGTATTTTTAAACTGTTGAATCCTAGTCGAATACCAAGGAATACATCTTAATGAATCCAAGTCAAACTGTATCTTAAGGTACTCCAAGTCCCTACTAATTGTGAATATATGATTAATTATTCAGTGAAGTGGTGATATCCTCCCCTGTATGC] [+] EMBL CD081845 [CTTCGGGGCCAAAATTCGGCACGAGGCGTATAACTAAATCGCAATTATATTACTTCTAAAGTTATTCATTTTATGATATACTTGTAACTAAAGTTTTCTTAATGTCCTCTCTTTTATTAATCTTTTTGTTTAGAAACAGATTAAACCATCTGCGGAAGTTTGTACGTATAACATAAATTGCCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAGCTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAAGTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATCATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGTGGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGATATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATTTATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATTTGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAG AAATGAACGCTGTATTCCGGCAACCTATCGGCTGTTATATTTTATTGGATGGAAACCTGATCCTTCTCAAGTAAACC ] [+] EMBL CD177826 [ tggaaggGTGTATCATTACAATTACCTGAATTAAAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGTGGATAGTGTAAATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGATATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATTTATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATTTGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAGAAAATGAACGCTGTATTCCGGCAACCTATCGGCTGCAATATTTTATTGGATGGAAACCTGATCCTTCTCAAGTAAGTGACCATTGTTCGTTATGTGTTGACTGAAGTATTTTTAAACTGTTGAATCCTAGTCGAATACCAAGGAATACATCTTAATGAATCCAAGTCAAACTGTATCTTAAGGTACTCCAAGTCCCTACTAATTGTGAATATATGATTAATTATTCAGTGAAGTGGTGATATCCTCCCCTGTATGC] consensusID : consensus_4112#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [TATCTCAGTTTATCACATCAGATAATATCGGGGTTCTCTACCAACTAGACAGTTCATCTGAGGTCTTAAAACAGATTGAACCATCTGCGGAAGTTTGTACGTATAACATAAATTGCCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAGCTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAAATATTAACTTGTTTGCGTAATGATGGATGCTTATTAGGTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATCATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGTGGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGATATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATTTATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATTTGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAGAAAATGAAC] [-] EMBL CD126343 [TATCTCAGTTTATCACATCAGATAATATCGGGGTTCTCTACCAACTAGACAGTTCATCTGAGGTCTTAAAACAGATTGAACCATCTGCGGAAGTTTGTACGTATAACATAAATTGCCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAGCTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAAATATTAACTTGTTTGCGTAATGATGGATGCTTATTAGGTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATCATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGTGGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGATATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATTTATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATTTGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAGAAAATGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4112#0 CTTCGGGGCCAAAATTCGGCACGAGGCGTATAACTAAATCGCAATTATATTACTTCTAAA 60 consensus_4112#1 ------------------------------------------------------------ consensus_4112#0 GTTATTCATTTTATGATATACTTGTAACTAAAGTTTTCTTAATGTCCTCTCTTTTATTAA 120 consensus_4112#1 -TATCTCAGTTTATCACAT-CAGATAATATCGGGGTTCTC--TACCAACTAGACAGTTCA 56 * *** ***** * ** * *** * **** * * ** ** * consensus_4112#0 TCTTTTTGTTTAGAAACAGATTAAACCATCTGCGGAAGTTTGTACGTATAACATAAATTG 180 consensus_4112#1 TCTGAG-GTCTTAAAACAGATTGAACCATCTGCGGAAGTTTGTACGTATAACATAAATTG 115 *** ** * ********* ************************************* consensus_4112#0 CCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAG 240 consensus_4112#1 CCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAG 175 ************************************************************ consensus_4112#0 CTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAA-------------------- 280 consensus_4112#1 CTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAAATATTAACTTGTTTGCGTAA 235 **************************************** consensus_4112#0 -----------------GTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATC 323 consensus_4112#1 TGATGGATGCTTATTAGGTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATC 295 ******************************************* consensus_4112#0 ATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGT 383 consensus_4112#1 ATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGT 355 ************************************************************ consensus_4112#0 GGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGA 443 consensus_4112#1 GGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGA 415 ************************************************************ consensus_4112#0 TATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATT 503 consensus_4112#1 TATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATT 475 ************************************************************ consensus_4112#0 TATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATT 563 consensus_4112#1 TATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATT 535 ************************************************************ consensus_4112#0 TGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAGAAA-TGA 622 consensus_4112#1 TGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAGAAAATGA 595 ******************************************************** *** consensus_4112#0 ACGCTGTATTCCGGCAACCTATCGGCTGTTATATTTTATTGGATGGAAACCTGATCCTTC 682 consensus_4112#1 AC---------------------------------------------------------- 597 ** consensus_4112#0 TCAAGTAAACCACCATTGTTCGTTATGTGTTGACTGAAGTATTTTTAAACTGTTGAATCC 742 consensus_4112#1 ------------------------------------------------------------ consensus_4112#0 TAGTCGAATACCAAGGAATACATCTTAATGAATCCAAGTCAAACTGTATCTTAAGGTACT 802 consensus_4112#1 ------------------------------------------------------------ consensus_4112#0 CCAAGTCCCTACTAATTGTGAATATATGATTAATTATTCAGTGAAGTGGTGATATCCTCC 862 consensus_4112#1 ------------------------------------------------------------ consensus_4112#0 CCTGTATGC 871 consensus_4112#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||