These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence [GAGCCAGTATNTGGCACGAGCGGGTCATAATTCTGATTTCATATTTACTAATTTATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAGTTAATGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGAATCTTATTATTCTAGGTGATATGAATGCTGATTGTGGTTACCTGTCCAAAAAGAAAATGTCACAACTTCATTTACGAAAGGATACAGAGTTCACTTGGGCTATTCCTGATAAACATGATACAACTTTAGGTAAAGGTGATTGTGCATATGACAGAATAATTATACATGGTAAACAATTAAAACAAGCAATTAAACCAGGAAGCACAAAAGCTTATCAATTTCCAATTGAATTAAATATTAGTAATCAATTGGCCAAACAAGTCAGTGATCATTATCCAATAGAAATGGAGATTAATTAAACCTATCATTTTATTCTATATACTCAAAGATGTTGAAAATATACTTGTATATGATATGTTTAAGCCTAATTAATATATTCT] [+] EMBL CD081694 [GAGCCAGTATNTGGCACGAGCGGGTCATAATTCTGATTTCATATTTACTAATTTATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAGTTAATGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGAATCTTATTATTCTAGGTGATATGAATGCTGATTGTGGTTACCTGTCCAAAAAGAAAATGTCACAACTTCATTTACGAAAGGATACAGAGTTCACTTGGGCTATTCCTGATAAACATGATACAACTTTAGGTAAAGGTGATTGTGCATATGACAGAATAATTATACATGGTAAACAATTAAAACAAGCAATTAAACCAGGAAGCACAAAAGCTTATCAATTTCCAATTGAATTAAATATTAGTAATCAATTGGCCAAACAAGTCAGTGATCATTATCCAATAGAAATGGAGATTAATTAAACCTATCATTTTATTCTATATACTCAAAGATGTTGAAAATATACTTGTATATGATATGTTTAAGCCTAATTAATATATTCT] consensusID : consensus_4116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [AATGAACAGAGTGTTTTAATGCATAGAACTGTCATAATTCTGATTTCATATTTACTAATTTATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAACATTTTTACATCAGAAAAATCTTTTCGAAAGACCTCCGATGGCTGTACAAATATTTATGAAACATTCTGCCATAAATATATTTG] [+] EMBL CD188675 [AATGAACAGAGTGTTTTAATGCATAGAACTGTCATAATTCTGATTTCATATTTACTAATTTATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAACATTTTTACATCAGAAAAATCTTTTCGAAAGACCTCCGATGGCTGTACAAATATTTATGAAACATTCTGCCATAAATATATTTG] consensusID : consensus_4116#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [TATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAGTTAATGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAACATTTTTACATCAGAAAAATCTTTCCGAAAGACCTCCGATGGCTGTACAAATATTTATGAAACATTCTGCCATAAATATATTTGGTTTAATTGTTATA] [-] EMBL CD187686 [TATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAGTTAATGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAACATTTTTACATCAGAAAAATCTTTCCGAAAGACCTCCGATGGCTGTACAAATATTTATGAAACATTCTGCCATAAATATATTTGGTTTAATTGTTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4116#1 AATGAACAGAGTGTTTTAATGCATAGAACTGTCATAATTCTGATTTCATATTTACTAATT 60 consensus_4116#2 ------------------------------------------------------------ consensus_4116#0 -------GAGCCAGTATNTGGCACGAGCGGGTCATAATTCTGATTTCATATTTACTAATT 53 consensus_4116#1 TATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTT 120 consensus_4116#2 --------------------------------TATTCAAGTATTTGGACGAAAGAAAGTT 28 consensus_4116#0 TATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTT 113 **************************** consensus_4116#1 TCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTT 180 consensus_4116#2 TCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTT 88 consensus_4116#0 TCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTT 173 ************************************************************ consensus_4116#1 ATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAAT 240 consensus_4116#2 ATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAAT 148 consensus_4116#0 ATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAAT 233 ************************************************************ consensus_4116#1 GA-----------------------------------------------ATATGCGGGTG 253 consensus_4116#2 GAGTTAATGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTG 208 consensus_4116#0 GAGTTAATGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTG 293 ** *********** consensus_4116#1 GTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATG 313 consensus_4116#2 GTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATG 268 consensus_4116#0 GTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATG 353 ************************************************************ consensus_4116#1 GATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAAC-ATTTTTACAT--- 369 consensus_4116#2 GATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAAC-ATTTTTACAT--- 324 consensus_4116#0 GATTAATTTACAGAATCTTATTATTCTAGGTGATATGAATGCTGATTGTGGTTACCTGTC 413 ************* **** * * **** * * * **** * consensus_4116#1 CAGAAAAATCTTTTCGAAAGACCTCCGATGGCTG--TACAAATATTTATGAAACATTCTG 427 consensus_4116#2 CAGAAAAATCTTTCCGAAAGACCTCCGATGGCTG--TACAAATATTTATGAAACATTCTG 382 consensus_4116#0 CAAAAAGAAAATGTCACAACTTCATTTACGAAAGGATACAGAGTTCACTTGGGCTATTCC 473 ** *** * * * ** * * * * **** * * * * * consensus_4116#1 CCATAAATATATTTG--------------------------------------------- 442 consensus_4116#2 CCATAAATATATTTGGTTTAATTGTTATA------------------------------- 411 consensus_4116#0 TGATAAACATGATACAACTTTAGGTAAAGGTGATTGTGCATATGACAGAATAATTATACA 533 ***** ** * consensus_4116#1 ------------------------------------------------------------ consensus_4116#2 ------------------------------------------------------------ consensus_4116#0 TGGTAAACAATTAAAACAAGCAATTAAACCAGGAAGCACAAAAGCTTATCAATTTCCAAT 593 consensus_4116#1 ------------------------------------------------------------ consensus_4116#2 ------------------------------------------------------------ consensus_4116#0 TGAATTAAATATTAGTAATCAATTGGCCAAACAAGTCAGTGATCATTATCCAATAGAAAT 653 consensus_4116#1 ------------------------------------------------------------ consensus_4116#2 ------------------------------------------------------------ consensus_4116#0 GGAGATTAATTAAACCTATCATTTTATTCTATATACTCAAAGATGTTGAAAATATACTTG 713 consensus_4116#1 ---------------------------------- consensus_4116#2 ---------------------------------- consensus_4116#0 TATATGATATGTTTAAGCCTAATTAATATATTCT 747 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||