These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 416 fasta sequence [TCATATTTAGCGCTAAAAGACACTTTTCTGCACTTCCAACTAGCGTGGACTTCGGTAAAGATGTCTTTATTTGTTCTGAATCACATTGCTTATTTTGAGGCGGTGATTTAAAAGTAAAATATGATGGGGGCCACCAAGTATCGTTTAAAAAACTTCTTGCGAGCGAGTATAATGTATTAGCTGCATTTGAATTCGATGTCCCAGCATAACGTAAACCCATAGCTAAAGCACATCCAACTAAGATGTTTAAATAAGCCAAACTTATGGCTTCAACATCCACTGAATCTTTATTGTGCAATCCAAATTGATCGAAGCACTCATTTTTTTCGGGAACTGCTTTGATATTGTCGACAATAGATTCCTCTTCAGACCATTGTCTTATATCATATCTCCTTGAACGTCGAACAGGTCGACCA] [+] EMBL CD202793 [TCATATTTAGCGCTAAAAGACACTTTTCTGCACTTCCAACTAGCGTGGACTTCGGTAAAGATGTCTTTATTTGTTCTGAATCACATTGCTTATTTTGAGGCGGTGATTTAAAAGTAAAATATGATGGGGGCCACCAAGTATCGTTTAAAAAACTTCTTGCGAGCGAGTATAATGTATTAGCTGCATTTGAATTCGATGTCCCA ] [+] EMBL CD065847 [ tgTATGATGCCGGCCGCCAAGTATCGTTTAAAAAACTTCTTGCGAGCGAGTATAATGTATTAGCTGCATTTGAATTCGATGTCCCAGCATAACGTAAACCCATAGCTAAAGCACATCCAACTAAGATGTTTAAATAAGCCAAACTTATGGCTTCAACATCCACTGAATCTTTATTGTGCAATCCAAATTGATCGAAGCACTCATTTTTTTCGGGAACTGCTTTGATATTGTCGACAATAGATTCCTCTTCAGACCATTGTCTTATATCATATCTCCTTGAACGTCGAACAGGTCGACCA] consensusID : consensus_4140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [TGATTCAGAACAAATAAAGACATCTTTACCGAAGTCCACGCTAGTTGGAAGTGCAGCTCAGTGTCTTTTAGCTCTCGCTATGATACTTGCTGGCTCTGGCAATCTGACTGTGCTTAAAATGGTTCGACAACTTCGAGCAATTCATTTATTCAATTCAAAACCGGATACTTTGAATTCTGGACAAAGTAACAACACTGCATCAGACTCACTCTATCATACTGTTACAGCCGCCGCAGCTCGTGCTGCCGCAACCACCCAAACGGTTTCCACTAGCTCAACAGGAGCGTCTGTTAGCGGTCCCGTATCTGTGGCGTCGGTATTTGGTGCTGCGCTTGGTCCGAGTTATGGATTACAAATGCTTCTCGCTAACACCGTTGGTTTG] [+] EMBL CD192961 [TGATTCAGAACAAATAAAGACATCTTTACCGAAGTCCACGCTAGTTGGAAGTGCAGCTCAGTGTCTTTTAGCTCTCGCTATGATACTTGCTGGCTCTGGCAATCTGACTGTGCTTAAAATGGTTCGACAACTTCGAGCAATTCATTTATTCAATTCAAAACCGGATACTTTGAATTCTGGACAAAGTAACAACACTGCATCAGACTCACTCTATCATACTGTTACAGCCGCCGCAGCTCGTGCTGCCGCAACCACCCAAACGGTTTCCACTAGCTCAACAGGAGCGTCTGTTAGCGGTCCCGTATCTGTGGCGTCGGTATTTGGTGCTGCGCTTGGTCCGAGTTATGGATTACAAATGCTTCTCGCTAACACCGTTGGTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4140#0 TCATATTTAGCGCTAAAAGACACTTTT-CTGCACTTCCAACTAGCGTGGACTTCGGTAAA 59 consensus_4140#1 TGATTCAGAACAAATAAAGACATCTTTACCGAAGTCCACGCTAGTTGGAAGTGCAGCTCA 60 * ** * * ******* *** * * * * * **** * * * * * * consensus_4140#0 GATGTCTTTATTTGTTCTGAATCACA-TTGCTTATTTTGAGGCGGTGATTTAAAAGTAAA 118 consensus_4140#1 G-TGTCTTTTAGCTCTCGCTATGATACTTGCTGGCTCTGGCAATCTGACT-GTGCTTAAA 118 * ******* ** ** * * ***** * ** *** * **** consensus_4140#0 ATATGATGGGGGCCACCAAGTA--TCGTTTAAAAAACTTCTTGCGAGCGAGTATAATGTA 176 consensus_4140#1 ATG-GTTCGACAACTTCGAGCAATTCATTTATTCAATTCAAAACCGGATACTTTGAATTC 177 ** * * * * * ** * ** **** ** * * * * * * * * consensus_4140#0 TTAGCTGCATTTGAATTCGATGTCCCAGCATAACGTAAACCCATAGCTAAAGCACATCCA 236 consensus_4140#1 TGGACAAAGTAACAA--CACTGCATCAGACTCACTCTATCATACTGTTACAGCCGCCGCA 235 * * * ** * ** *** * ** * * * * ** *** ** consensus_4140#0 ACTAA-GATGTTTAAATAAGCCAAACTTATGGCTTCAACATCCACTGAATCTTTATTGTG 295 consensus_4140#1 GCTCGTGCTGCCGCAACCACCCAAACGGTTTCCACTAGC-TCAACAGGAGCGTCTGTTAG 294 ** * ** ** * ****** * * * * ** ** * * * * * * consensus_4140#0 CAATCCAAATTGATCGAAGCACTCATTTTTTTCGGGAACTGCTTTGA--TATTGTCGACA 353 consensus_4140#1 CGGTCCCGTATCTGTGGCGTCGGTATTTGGTGCTGCGCTTGGTCCGAGTTATGGATTACA 354 * *** * * * **** * * * ** * ** *** * *** consensus_4140#0 ATAGATTCCTCTTCAGACCATTGTCTTATATCATATCTCCTTGAACGTCGAACAGGTCGA 413 consensus_4140#1 AATGCTTCTCGCTAACACCGTTGGTTTG-------------------------------- 382 * * *** * * *** *** ** consensus_4140#0 CCA 416 consensus_4140#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||