These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_416#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [GAATTCGGCACGAGGTGAATTATCTGGACCTCATGATGGNGCCTGTATCATGGTCTATATGTCTAGAATGAAAACTGGAGTGGGAAAAAACAAATTGGTGGATTCGATTTTAGTAAGACAGTTCGGAATCTTAAAATTCAAATGTAAGAAGTTGGAAGGAACAGACTCAACGGATACAATCAAGCGTTTTAAACTCGGAAANNNNNNNNNNNATTCGAGATCAGAAAATTTCATTTGGGTAGAATGCCTGGCGTCTACTGGCTCAGTAACTACATTACTTCCACTTACTCGTCTCTCATACCGTTGTCATGTCGGACAGTTCCAACCAGAGGACAAAGTTATTGGCGTTGTAATGAAANNNNNNNNCGAATCGTTCGTAGTTGATATAGGTTGTGCTTCTCCGGCTATTCTCAATTACTTGTCATTCGAGGGTTCTTCTAAAAAGAATCGTCCTGACATTCATGCAGGTGATGTTCTTTATGCCATGATTACACGAGCCGACAGAGAGGCGGGAAAAGCTTGTGGAATGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAATGCTGGAGGTCGGTCTGGTGGTATATTGTTACACTGTACGCAAGATTTGGTCAAGCG] [+] EMBL CD080937 [GAATTCGGCACGAGGTGAATTATCTGGACCTCATGATGGNGCCTGTATCATGGTCTATATGTCTAGAATGAAAACTGGAGTGGGAAAAAACAAATTGGTGGATTCGATTTTAGTAAGACAGTTCGGAATCTTAAAATTCAAATGTAAGAAGTTGGAAGGAACAGACTCAACGGATACAATCAAGCGTTTTAAACTCGGAAANNNNNNNNNNNATTCGAGATCAGAAAATTTCATTTGGGTAGAATGCCTGGCGTCTACTGGCTCAGTAACTACATTACTTCCACTTACTCGTCTCTCATACCGTTGTCATGTCGGACAGTTCCAACCAGAGGACAAAGTTATTGGCGTTGTAATGAAANNNNNNNNCGAATCGTTCGTAGTTGATATAGGTTGTGCTTCTCCGGCTATTCTCAATTACTTGTCATTCGAGGGTTCTTCTAAAAAGAATCGTCCTGACATTCATGCAGGTGATGTTCTTTATGCCATGATTACACGAGCCGACAGAGAGGCGGGAAAAGCTTGTGGAATGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAATGCTGGAGGTCGGTCTGGTGGTATATTGTTACACTGTACGCAAGATTTGGTCAAGCG] consensusID : consensus_416#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [GGGTTCTTCTAAAAAGAATCGTCCTGACATTCATGCAGGTGATGTTCTTTATGCCATGATTACACGAGCCGACAGAGATTTAGAAATTGAATTGTCATGTGTTGATGAGGCGGGAAAAGCTTGTGGAATGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAATGCTGGAGGTCGGTCTGGTGGTATATTGTTACACTGTACGCAAGATTTGGTCAGGCGGTTATGCAATCAAGATGAATTCCCTCTACTAAAACTTTTATCTAAGGTGTATCCGTTTGAAATATTCTTAGGTGCAAATGGACGAATATGGTTAACAGCTGGTTCTGCTAGAGAAATAATGATATTAGCCAATGCAATAGCCATTGCTGAACATATATCAGCTAGTGAATGTTGTCAATTAGCTAAAGAACTTTGTTAAGTATTTTTTTTACATTTTGATAAAACGTTTTATTTTCTTTAAATGAATTTTGAAAATTGTACATATTTATTGATATTGTACATTTGTAAGTCTATTTTGTATCTAATAGATTGAAGTTTACTTTGTTTTAAAAATTTGTTCATTGAGAAATAATACGTGAAAGTAAAATCGTT] [-] EMBL CD074771 [GGGTTCTTCTAAAAAGAATCGTCCTGACATTCATGCAGGTGATGTTCTTTATGCCATGATTACACGAGCCGACAGAGATTTAGAAATTGAATTGTCATGTGTTGATGAGGCGGGAAAAGCTTGTGGAATGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAATGCTGGAGGTCGGTCTGGTGGTATATTGTTACACTGTACGCAAGATTTGGTCAGGCGGTTATGCAATCAAGATGAATTCCCTCTACTAAAACTTTTATCTAAGGTGTATCCGTTTGAAATATTCTTAGGTGCAAATGGACGAATATGGTTAACAGCTGGTTCTGCTAGAGAAATAATGATATTAGCCAATGCAATAGCCATTGCTGAACATATATCAGCTAGTGAATGTTGTCAATTAGCTAAAGAACTTTGTTAAGTATTTTTTTTACATTTTGATAAAACGTTTTATTTTCTTTAAATGAATTTTGAAAATTGTACATATTTATTGATATTGTACATTTGTAAGTCTATTTTGTATCTAATAGATTGAAGTTTACTTTGTTTTAAAAATTTGTTCATTGAGAAATAATACGTGAAAGTAAAATCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_416#0 GAATTCGGCACGAGGTGAATTATCTGGAC-CTCATGATGGNGCCTGTATCATGGTCTATA 59 consensus_416#1 GGGTTCTTC-TAAAAAGAATCGTCCTGACATTCATGCAGGTG--------ATGTTCTTTA 51 * *** * * **** ** *** ***** ** * *** *** ** consensus_416#0 TGTCTAGAATGAAAACTGGAGTGGGAAAAAACAAATTGGTGGATTCGATTTTAGTAAGAC 119 consensus_416#1 TGCCATGATTACACGAGCCGACAGAGATTTAGAAATTGAATTGTCATGTGTTGATGAGGC 111 ** * ** * * * * * ****** * * ** * ** * consensus_416#0 AGTTCGGAATCTTAAAATTCAAATGTAAGAAGTTGGAAGGAACA-GACTCAACGGATACA 178 consensus_416#1 GG--GAAAAGCTTGTGGAATGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAAT 169 * ** *** * * ** * * **** * * * ** consensus_416#0 ATCAAGCGTTTTAAACTCGGAAANNNNNNNNNNNATTCGAGATCAGAAAATTTCATTTGG 238 consensus_416#1 GCTGGAGGTC---GGTCTGGTGGTATATTGTTACACT---GTACGCAAGATTTGGTCAGG 223 ** ** * * * * ** **** * ** consensus_416#0 GTAGAATGC--CTGGCGTCTACTGGCTCAGTAACTACATTACTTCCA--CTTACTCGTCT 294 consensus_416#1 CGGTTATGCAATCAAGATGAATTCCCTCTACTAAAACTTTTATCTAAGGTGTATCCGTTT 283 **** * * * *** * ** ** * * ** *** * consensus_416#0 CTCATACCGTT--GTCATGTCGGACAGTTCCAACCAGAGGACAAAGTTATTGGCGTTGTA 352 consensus_416#1 GAAATATTCTTAGGTGCAAATGGACGAATATGGTTAACAGCTGGTTCTGCTAGAGAAATA 343 *** ** ** **** * * * * * * * ** consensus_416#0 ATGAAANNNNNNNNCGAATCGTTCGTAGTTGA-TATAGGTTGTGCTTCTCCGGCTATTCT 411 consensus_416#1 ATGATATTAGCCAATGCAATAGCCATTGCTGAACATATATCA-GCTAGT--GAATGTTGT 400 **** * * * * * * *** *** * *** * * * ** * consensus_416#0 CAATTACTTGTCATTCGAGGGTTCTTCTAAAAAGAATCGTCCTGACATTCATGCAG---G 468 consensus_416#1 CAATTAGCTA------AAGAACTTTGTTA---AGTATTTTTTTTACATTTTGATAAAACG 451 ****** * ** * * ** ** ** * * ***** * * consensus_416#0 TGATGTTCTTTATGCCATGATTACACGAGCCG-ACAGAGAGGCGGGAAAAGCTTGTGGAA 527 consensus_416#1 TTTTATTTTCTTTAAATGAATTTTGAAAATTGTACATATTTATTGATATTGTACATTTG- 510 * * ** * * * *** * * *** * * * * * consensus_416#0 TGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAATGCTGGAGGTCGGTCTGGTG 587 consensus_416#1 TAAGTCTATTTTGTATCTAATAGATTGAAGTT-TACTTTGTTTTAAAAATTTGTTCATTG 569 * ** * ** ** * * ** * * * * * * * * ** ** consensus_416#0 GTATATTGTTACACTGTACGCAAGATTTGGTCAAGCG 624 consensus_416#1 AGA-AATAATACG-TGAAAGTAAAATC--GTT----- 597 * * * *** ** * * ** ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||