These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4160#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [TTTCAGAACTAATCAATGCAACCTTGAAAACCTTTAAAGCGAGTGGTGATCCTGTTGTTGGTGTGCATATCAGACGTACTGACAAGGTTGGTGTTTGTTCATATACCTCGTTAGAATATGATATGATGCACTTTATTGTTTATTGCTCAAAATCCGGACAGTGCATGTTTAAAATATAATTCTGGAGGCTAAGTTTCACAACTTATCAGAGTACATGGAGCAAGTGGATAAATTCTTTGATCGACAAAATGCTAATCACCTGGTAATGTCAAAGAGACATGACCTAGACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGCATTGGAAGAAAAAACGCTCTTCGAGCTAAACGAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCAATTTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGGTAGATCCCATTCAGCTGATGTGGAATTCCGAATGACATATAATTCAATGAATAATGCAGTCATTGATGTCATTGCACTTTCAATGACGGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGCCTATGAATTAATGCANACGCGTCATATGGAGT] [+] EMBL CD079163 [TTTCAGAACTAATCAATGCAACCTTGAAAACCTTTAAAGCGAGTGGTGATCCTGTTGTTGGTGTGCATATCAGACGTACTGACAAGGTTGGTGTTTGTTCATATACCTCGTTAGAATATGATATGATGCACTTTATTGTTTATTGCTCAAAATCCGGACAGTGCATGTTTAAAATATAATTCTGGAGGCTAAGTTTCACAACTTATCAGAGTACATGGAGCAAGTGGATAAATTCTTTGATCGACAAAATGCTAATCACCTGGTAATGTCAAAGAGACATGACCTAGACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGCATTGGAAGAAAAAACGCTCTTCGAGCTAAACGAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCAATTTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGGTAGATCCCATTCAGCTGATGTGGAATTCCGAATGACATATAATTCAATGAATAATGCAGTCATTGATGTCATTGCACTTTCAATGACGGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGCCTATGAATTAATGCANACGCGTCATATGGAGT] consensusID : consensus_4160#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [TATGCCCATCTTAGCGGTCGTCAAATTTACTCAGTGTATTCTTTAAGGGAGTTATTGGTGTGGATTGCAATATACTCCTTTAATAGGACGAAATATGTGCCCCCCATACATCCACGTTTTCCACTGCTTTTCAACAACAATTTGGCCTATGATGCAAACTACGGAGTTTTCATTTTACGAACAACTTACATCAAGTTCACTCTTAAGAATTCTTTTTGAATGAGTAGAAACTGCGCATTTTGAGAACAAAAATGTTTCTCATGTTATATTATACATAATTTTATCACGTCGAATTCACACCGACCACTTTATCATTATCAATATACATAATGAATCTGCTTTGACATTTTCCAAACTAATAGGACCTAAACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGAATTGGAAGAAAAAACGCTCTTCGAGCTAAACTAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCAATTTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGG] [+] EMBL BF936483 [TATGCCCATCTTAGCGGTCGTCAAATTTACTCAGTGTATTCTTTAAGGGAGTTATTGGTGTGGATTGCAATATACTCCTTTAATAGGACGAAATATGTGCCCCCCATACATCCACGTTTTCCACTGCTTTTCAACAACAATTTGGCCTATGATGCAAACTACGGAGTTTTCATTTTACGAACAACTTACATCAAGTTCACTCTTAAGAATTCTTTTTGAATGAGTAGAAACTGCGCATTTTGAGAACAAAAATGTTTCTCATGTTATATTATACATAATTTTATCACGTCGAATTCACACCGACCACTTTATCATTATCAATATACATAATGAATCTGCTTTGACATTTTCCAAACTAATAGGACCTAAACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGAATTGGAAGAAAAAACGCTCTTCGAGCTAAACTAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCAATTTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGG] consensusID : consensus_4160#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [ATTTGCACAATTAATCAATGCAACCTTGAAGAGCTTTAAAGCGAGTGGAAATCCTGTTGTTGGCGTGCATATCAGACGTACTGATAAGATAATTTACGAGGCTAAGTTTCACAACTTATCAGAGTATATGAAACAAGTGGATAAATTCTTTGATCAACAAAATGCTAGTTTCCTGGCAATGTCGAAGAGACATGACATAGAAGAGAAGAAATTTGGATCGATTTTTGGAAGAACTATTAGAAAAAATAACTTTGCTAAACGAAGTGTTTATTTGGCCACAGATGATCCGAATGTTTTTACTCAATTCCCATACAGTCATCCTAAATACATTTTGTATGGTAGTCCAGGTAGATCCCATTCAGCTGATTTGAGGATGCGGAAGACATATAATTCAATAAATAATGCAATCATTGACGTCATTGCACTTTCAATGACAGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGCCTATGAATTAATGCAAACGCGTCAT] [-] EMBL CD066172 [ATTTGCACAATTAATCAATGCAACCTTGAAGAGCTTTAAAGCGAGTGGAAATCCTGTTGTTGGCGTGCATATCAGACGTACTGATAAGATAATTTACGAGGCTAAGTTTCACAACTTATCAGAGTATATGAAACAAGTGGATAAATTCTTTGATCAACAAAATGCTAGTTTCCTGGCAATGTCGAAGAGACATGACATAGAAGAGAAGAAATTTGGATCGATTTTTGGAAGAACTATTAGAAAAAATAACTTTGCTAAACGAAGTGTTTATTTGGCCACAGATGATCCGAATGTTTTTACTCAATTCCCATACAGTCATCCTAAATACATTTTGTATGGTAGTCCAGGTAGATCCCATTCAGCTGATTTGAGGATGCGGAAGACATATAATTCAATAAATAATGCAATCATTGACGTCATTGCACTTTCAATGACAGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGCCTATGAATTAATGCAAACGCGTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4160#0 ------------------------------------------------------------ consensus_4160#2 ------------------------------------------------------------ consensus_4160#1 TATGCCCATCTTAGCGGTCGTCAAATTTACTCAGTGTATTCTTTAAGGGAGTTATTGGTG 60 consensus_4160#0 -----------TTTCAGAACTAATCA-ATGCAACCTTGAAAACCTTTAAAGCGAGTGGTG 48 consensus_4160#2 ---------ATTTGCACAATTAATCA-ATGCAACCTTGAAGAGCTTTAAAGCGAGTGGAA 50 consensus_4160#1 TGGATTGCAATATACTCCTTTAATAGGACGAAATATGTGCCCCCCATACATCCACGTTTT 120 * * **** * * ** * * ** * * * consensus_4160#0 ATCCTGTTGTTGGTGTGCATATCAGACGTACTGACAAGGTTGGTGTTTGTTCATATACCT 108 consensus_4160#2 ATCCTGTTGTTGGCGTGCATATCAGACGTACTGATAAG---------------------- 88 consensus_4160#1 CCACTGCTTTTCAACAACA-ATTTGGCCTA-TGATGCAAACTACGGAGTTTTCATTTTAC 178 *** * ** ** ** * * ** *** consensus_4160#0 CGTTAGAATATGATATGATGCACTTTATTGTTTATTGCTCAAAATCCGGACAGTGCATGT 168 consensus_4160#2 ------------------------------------------------------------ consensus_4160#1 GAACAACTTACATCAAGTTCACTCTTAAGAATTCTTTTTGAATGAGTAGAAACTGCGCAT 238 consensus_4160#0 TTAAAATATAA-----TTCTGGAGGCTAAGTTTCACAACTTATCAGAGTACATGGAGCAA 223 consensus_4160#2 -------ATAA-----TTTACGAGGCTAAGTTTCACAACTTATCAGAGTATATGAAACAA 136 consensus_4160#1 TTTGAGAACAAAAATGTTTCTCATGTTATATTATACATAATTTTATCACGTCGAATTCAC 298 * ** ** * * ** ** *** * * * ** consensus_4160#0 GTGGATAAATTCTTTG--ATCGA----CAAAATGCTAATCACCTGGTAATGTC-AAAGAG 276 consensus_4160#2 GTGGATAAATTCTTTG--ATCAA----CAAAATGCTAGTTTCCTGGCAATGTC-GAAGAG 189 consensus_4160#1 ACCGACCACTTTATCATTATCAATATACATAATGAATCTGCTTTGACATTTTCCAAACTA 358 ** * ** * *** * ** **** * ** * * ** ** consensus_4160#0 ACATGACCTAGACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGCATTGGAAGAAAAAA 336 consensus_4160#2 ACATGACATAGAAGAGAAGAAATTTGGATCGATTTTTGGAAGAACTATTAGAAAAAATAA 249 consensus_4160#1 ATAGGACCTAAACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGAATTGGAAGAAAAAA 418 * * *** ** * *** ******* * ******* ** ** ** *** *** *** ** consensus_4160#0 CGCTCTTCGAGCTAAACGAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCA 396 consensus_4160#2 CTTT------GCTAAACGAAGTGTTTATTTGGCCACAGATGATCCGAATGTTTTTACTCA 303 consensus_4160#1 CGCTCTTCGAGCTAAACTAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCA 478 * * ******* *************** ************************** consensus_4160#0 ATTTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGGTAGATCCCATTCAGC 456 consensus_4160#2 ATTCCCATACAGTCATCCTAAATACATTTTGTATGGTAGTCCAGGTAGATCCCATTCAGC 363 consensus_4160#1 ATTTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGG--------------- 523 *** * ***** ***** ** ****** **************** consensus_4160#0 TGATGTGGAATTCCGAATGACATATAATTCAATGAATAATGCAGTCATTGATGTCATTGC 516 consensus_4160#2 TGATTTGAGGATGCGGAAGACATATAATTCAATAAATAATGCAATCATTGACGTCATTGC 423 consensus_4160#1 ------------------------------------------------------------ consensus_4160#0 ACTTTCAATGACGGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGCCTA 576 consensus_4160#2 ACTTTCAATGACAGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGCCTA 483 consensus_4160#1 ------------------------------------------------------------ consensus_4160#0 TGAATTAATGCANACGCGTCATATGGAGT 605 consensus_4160#2 TGAATTAATGCAAACGCGTCAT------- 505 consensus_4160#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||