These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 811 fasta sequence [GGTACTAAATAAACATGTGATTTGGTAGGTGGTAGGTCATCCGGAATTACAAGAGCCAACTTAATTAAATGGTTAGCCTATTTAGTTTTTTGCTAACCATCATGATGAGTAACAATTGGCTACATAAGAACCGTTGTCTAGGTTTTTTGTAAAATTGGTACTTCGACAGTCATTTTTCCTATTGAATTGCATAATGATTCTGTTCGTCACTTTGTACATGTTCTAAAGTTGACGCGTAATCAAAACGTTACTGAATACATTCACTAAACCCCATTGCACTTTCGAATATCCTTAGGATGAAGCCAGGGCAATAAAAAAAACAAGCTATTAAATAGAGTCAAAATGTTTTCTCAGCTCAACAATATTTCGCTGATTTTTTTATGAATCCCTGAAATATATAGAAGTTACCTAGACATTAGTTTACAATCCGGAGATTATTTGAAATGAAGCTTTGAAATATAAAACATGTACTTTGCATCTTGAGATAATATTATTTAATCGTCAATAAAGAAATAATATACACATATTTACATATACATAGTTACTGCAATATGGTTCCAACAGTCGCAGAATCTACTTCGTTTACGATCGACTTCACTTCTTCAATAATTCCTTTCCTCGAGATAAGCTGCTTTTTATAAACTTCAATTGCCTCAGTAACCTTTTTGTTTAGTTCTTGTATAGAACACAATGCTTGACGCTTTGTTTCTTTAAAATCAGTTTCGTGTGCGATTGTTGGTGCGCTGGGAGGAATTTGAGATCTGCTCATCAACGCTCGATAAAAAGACGGAGAAGGATCAACGAAAACCAT] [+] EMBL CD084643 [GGTACTAAATAAACATGTGATTTGGTAGGTGGTAGGTCATCCGGAATTACAAGAGCCAACTTAATTAAATGGTTAGCCTATTTAGTTTTTTGCTAACCATCATGATGAGTAACAATTGGCTACATAAGAACCGTTGTCTAGGTTTTTTGTAAAATTGGTACTTCGACAGTCATTTTTCCTATTGAATTGCATAATGATTCTGTTCGTCACTTTGTACATGTTCTAAAGTTGACGCGTAATCAAAACGTTACTGAATACATTCACTAAACCCCATTGCACTTTCGAATATCCTTAGGATGAAGCCAGGGCAATAAAAAAAACAAGCTATTAAATAGAGTCAAAATGTTTTCTCAGCTCAACAATATTTCGCTGATTTTTTTATGAATCCCTGAAATATATAGAAGTTACCTAGACATTAGTTTACAATCCGGAGATTATTTGAAATGAAGCTTTGAAATATAAAACATGTACTTTGCATCTTGAGATAATATTATTTAATCGTCAATAAAGAAATAATATACACATATTTACATATACATAGTTACTGCAATATGGTTCCAACAGTCGCAGAATCTACTTCGTT ] [-] EMBL CD084662 [ AAATAGAGTCAGAATGTTTTCTCAGCTCAACAATAGTTCGCTGATTTTTTTATGAATCCCTGAAATATATAGAAGTTACCTAGGCATTAGTTTACAATCCGGAGATTATTTGAAATGAAGCTTTGAAATATAAAACATGTACTTTGCATCTTGAGATAATATTATTTAATCGTCAATAAAGAAATAATATACACATATTTACATATACATAGTTACTGCAATATGGTTCCAACAGTCGCAGAATCTACTTCGTTTACGATCGACTTCACTTCTTCAATAATTCCTTTCCTCGAGATAAGCTGCTTTTTATAAACTTCAATTGCCTCAGTAACCTTTTTGTTTAGTTCTTGTATAGAACACAATGCTTGACGCTTTGTTTCTTTAAAATCAGTTTCGTGTGCGATTGTTGGTGCGCTGGGAGGAATTTGAGATCTGCTCATCAACGCTCGATAAAAAGACGGAGAAGGATCAACGAAAACCAT] consensusID : consensus_4181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [CAAATAAATCATTCACGAGAAAAGCTGCATTTAAAAACATCGATTGCCTCAGTAACCTTTTGTTTAGATCTGTAAAGAACACAATGCTTGACGCTTTGTATCTTTAAATCAGTTTCGTGTGCGATTGTATGTGCGCTGGGAGGAATTTTAGATCTGCTCATCAACGCTCGATAAAAAGACGGAGAAGGATCAACGAAAACCAATTCGTCGTAGATCTCTCGTACTAAGCTCTTATGACCCATCATTATTTCATGGTCACAATGAAACAACTTAATTAGATGAGTTATTATCAGGGG] [-] EMBL CD157937 [CAAATAAATCATTCACGAGAAAAGCTGCATTTAAAAACATCGATTGCCTCAGTAACCTTTTGTTTAGATCTGTAAAGAACACAATGCTTGACGCTTTGTATCTTTAAATCAGTTTCGTGTGCGATTGTATGTGCGCTGGGAGGAATTTTAGATCTGCTCATCAACGCTCGATAAAAAGACGGAGAAGGATCAACGAAAACCAATTCGTCGTAGATCTCTCGTACTAAGCTCTTATGACCCATCATTATTTCATGGTCACAATGAAACAACTTAATTAGATGAGTTATTATCAGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4181#0 GGTACTAAATAAACATGTGATTTGGTAGGTGGTAGGTCATCCGGAATTACAAGAGCCAAC 60 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 TTAATTAAATGGTTAGCCTATTTAGTTTTTTGCTAACCATCATGATGAGTAACAATTGGC 120 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 TACATAAGAACCGTTGTCTAGGTTTTTTGTAAAATTGGTACTTCGACAGTCATTTTTCCT 180 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 ATTGAATTGCATAATGATTCTGTTCGTCACTTTGTACATGTTCTAAAGTTGACGCGTAAT 240 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 CAAAACGTTACTGAATACATTCACTAAACCCCATTGCACTTTCGAATATCCTTAGGATGA 300 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 AGCCAGGGCAATAAAAAAAACAAGCTATTAAATAGAGTCAAAATGTTTTCTCAGCTCAAC 360 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 AATATTTCGCTGATTTTTTTATGAATCCCTGAAATATATAGAAGTTACCTAGACATTAGT 420 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 TTACAATCCGGAGATTATTTGAAATGAAGCTTTGAAATATAAAACATGTACTTTGCATCT 480 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 TGAGATAATATTATTTAATCGTCAATAAAGAAATAATATACACATATTTACATATACATA 540 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 GTTACTGCAATATGGTTCCAACAGTCGCAGAATCTACTTCGTTTACGATCGACTTCACTT 600 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 CTTCAATAATTCCTTTCCTCGAGATAAGCTGCTTTTTATAAACTTCAATTGCCTCAGTAA 660 consensus_4181#1 --CAAATAAATCATT--CACGAGAAAAGCTGCATTT-AAAAACATCGATTGCCTCAGTAA 55 ***** ** ** * ***** ******* *** * **** ** ************* consensus_4181#0 CCTTTTTGTTTAGTTCTTGTATAGAACACAATGCTTGACGCTTTGTTTCTTTAAAATCAG 720 consensus_4181#1 CCTTTT-GTTTAGATCT-GTAAAGAACACAATGCTTGACGCTTTGTATCTTTAAA-TCAG 112 ****** ****** *** *** ************************ ******** **** consensus_4181#0 TTTCGTGTGCGATTGTTGGTGCGCTGGGAGGAATTTGAGATCTGCTCATCAACGCTCGAT 780 consensus_4181#1 TTTCGTGTGCGATTGTATGTGCGCTGGGAGGAATTTTAGATCTGCTCATCAACGCTCGAT 172 **************** ****************** *********************** consensus_4181#0 AAAAAGACGGAGAAGGATCAACGAAAACCAT----------------------------- 811 consensus_4181#1 AAAAAGACGGAGAAGGATCAACGAAAACCAATTCGTCGTAGATCTCTCGTACTAAGCTCT 232 ****************************** consensus_4181#0 ------------------------------------------------------------ consensus_4181#1 TATGACCCATCATTATTTCATGGTCACAATGAAACAACTTAATTAGATGAGTTATTATCA 292 consensus_4181#0 ---- consensus_4181#1 GGGG 296 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||