These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [GGCACGACGGTTTTTTNATTGAACACAAATGTAACATNNATTCTATTTGGAATTCGTAATCAACGCACAATCAAGTACAAAAGAATTGTCAGTTGGTACAAATACCACAACCGCCACAGCTAAAATGGGAATCAAGACTTCCGCAATCTGATGTATGTCTTCTCCTCAGGTCCATCATATATCTGTTCAGCTGTGTATCAGGTAGGAACTCTTTATGATCTAGAATGTACTTATTAGTATCAGGATTAATAACGGAAATAGGGATGGACTCACCTGGGTCCCTGTAATGTTGTTGCGACTGGCTTGCATATGAACTACAGATTTACTAACCTGTTTTAGCAGACATTTCGTAGACTGTGCAAAATCAATTTGTCAATAGAATGTAACATTGAAAGACTATAAACTCTCTCTATTTGGATGAAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAATTCTGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCCAGGATGGACTTCATAAAGCTGATCGATATCATCTTTACCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACAATTATTGCAATTCTTTTCTTCGTTG] [+] EMBL CD081650 [GGCACGACGGTTTTTTNATTGAACACAAATGTAACATNNATTCTATTTGGAATTCGTAATCAACGCACAATCAAGTACAAAAGAATTGTCAGTTGGTACAAATACCACAACCGCCACAGCTAAAATGGGAATCAAGACTTCCGCAATCTGATGTATGTCTTCTCCTCAGGTCCATCATATATCTGTTCAGCTGTGTATCAGGTAGGAACTCTTTATGATCTAGAATGTACTTATTAGTATCAGGATTAATAACGGAAATAGGGATGGACTCACCTGGGTCCCTGTAATGTTGTTGCGACTGGCTTGCATATGAACTACAGATTTACTAACCTGTTTTAGCAGACATTTCGTAGACTGTGCAAAATCAATTTGTCAATAGAATGTAACATTGAAAGACTATAAACTCTCTCTATTTGGATGAAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAATTCTGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCCAGGATGGACTTCATAAAGCTGATCGATATCATCTTTACCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACAATTATTGCAATTCTTTTCTTCGTTG] consensusID : consensus_4188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 490 fasta sequence [TGAGTAGCACT-ATAAAATCTCTCTATTTGGATGAAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAATTCTGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACAATTATTGCAATTCTTTTCTTCGTTGTTTTTAAGGTCAGTCAATAATATGCAGCATAAAAACTGAGAAATATGTGAGTCGGTAGATTCGTCACTCCATATTTGCAGTCGCATAACAATATCAAGAAAAATCCAAAAGTATCAGAAATAGTTACAATATGCGAAATAGCAGAAAAGATTGCGTGTAGAAAAAGATAGAAGGTTTAGATCGGCATAAGTGCCTTTCTTGAAATGTATCATTTTCTTCAAGTTGGCTATCATTTCGATTTGGAAGGGAAAGAGGTGCAAATCAATTAATTCCGATCACTAAGTTGATATCAAATCA] [+] EMBL CD113728 [TGAGTAGCACT ATAAAATCTCTCTATTTGGATGAAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAATTCTGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACAATTATTGCAATTCTTTTCTTCGTTGTTTTTAAGGTCAGTCAATAATATGCAGCATAAAAACTGAGAAATATGTGAGTCGGTAGATTCGTCACTCCATATTTGCAGTCGCATAACAATATCAAGAAAAATCCAAAAGTATCAGAAATAGTTACAATATGCGAAATAGCAGAAAAGATTGCGTGTAGAAAAAGATAGAAGGTTTAGATCGGCATAAGTGCCTTTCTTGAAATGTATCATTTTCTTCAAGTTGGCTATCATTTCGATTTGGAAGGGAAAGAGGTGCAAATCAATTAATTCCGATCACTAAGTTGATATCAAATCA] [+] EMBL CD113866 [tcgGTATCACTGATATAATCTCTCTATTTGGATGAAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAATTCTGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACAATTATTGCAATTCTTTTCTTCGTTGTTTTTAAGGTCAGTCAATAATATGCAGCATAAAAACTGAGAAATATGTGAGTCGGTAGATTCGTCACTCCATATTTGCAGTCGCATAACAATATCAAGAAAAATCCAAAAGTATCAGAAATAGTTACAATATGCGAAATAGCAGAAAAGATTGCGTGTAGAAAAAGATAGAAGGTTTAGATCGGCATAAGTGCCTTTCTTGAAATGTATCATTTTCTTCAAGTTGGCTATCATTTCGATTTGGAAGGGACAGAGGTGCAAATCAATTAATTCCGATCACTAAGTTGATATCACATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4188#0 GGCACGACGGTTTTTTNATTGAACACAAATGTAACATNNATTCTATTTGGAATTCGTAAT 60 consensus_4188#1 -------------------TGAGTAGCACTATAAAATCT-CTCTATTTGGATGAAAATGT 40 *** * * * *** ** ********** * consensus_4188#0 CAACGCACAATCAAGTACAAAAGAATTGTCAGTTGGTACAAATACCACAACCGCCACAGC 120 consensus_4188#1 CAGTGTTTAAGCAATTCCA------TTGTCGCTT--TTCAAGTACGGT--CTGGTAATTC 90 ** * ** *** * ** ***** ** * *** *** * * * * consensus_4188#0 TAAAATGGGAATCAAGACTT-CCGCAATCTGATGTATGTCT-TCTCCTCAGGTCCATCAT 178 consensus_4188#1 TGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCTCCACCGTTCCTGGGT 150 * * * * * * * * * *** * *** ***** * * *** * consensus_4188#0 ATATCTGTTCAGCTGTGTATCAGGTAGGAACTCTTTATGATCTAGAATGTACTTATTAGT 238 consensus_4188#1 GCGAAGCACTGGATGACAATTA--TTGCAATTCTTT----TCTTCGTTGT---TTTTAAG 201 * ** ** * * * ** ***** *** *** * *** consensus_4188#0 ATCAGG-ATTAATAACGGAAATAGGGATGGACTCACCTGGGTCCCTGTAATGTTGTTGCG 297 consensus_4188#1 GTCAGTCAATAATATGCAGCATAAAAACTGAGAAATATGTGAGTCGGTAGATTCGTCACT 261 **** * ***** *** * ** * ** * * *** * ** * consensus_4188#0 ACTGGCTTGCATATGAACTACAGATTTACTAACCTGTTTTAGCAGACATTTCGTAGACTG 357 consensus_4188#1 CCATATTTGCAGTCGCATAACAA---TATCAAGAAAAATC--CAAAAGTATCAGAAATAG 316 * ***** * * *** ** ** * ** * * ** * * * consensus_4188#0 T-GCAAAAT-CAATTTGTCAATAGAATGTAACATTGAAAGACTATAAACTCTCTCTATTT 415 consensus_4188#1 TTACAATATGCGAAATAGCAGAAAAGATTGCGTGTAGAAAAAGATAGAAGGTTTAGATCG 376 * *** ** * * * ** * * * * ** * *** * * * ** consensus_4188#0 GGATGAAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAAT 475 consensus_4188#1 GCAT--AAGTGCCTTTCTTGAAATGTATCATTTTCTTCAAGTTGGCTATCATTTCG--AT 432 * ** ** ** * * ** ** ** ** * * ** * * * ** consensus_4188#0 TCTGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCCAGGATGGACTTCA 535 consensus_4188#1 TTGGAAGGGAAAGAGGT-GCAAATCAATTAATTCCGATCACTAAGTTGATATCAAATCA- 490 * * * ****** * * * * * ** ** * * consensus_4188#0 TAAAGCTGATCGATATCATCTTTACCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACA 595 consensus_4188#1 ------------------------------------------------------------ consensus_4188#0 ATTATTGCAATTCTTTTCTTCGTTG 620 consensus_4188#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||