These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 859 fasta sequence [GAGCCTNATTCGGCACCAGGCGTTTGTCAGGGGATATTTTCATTAGCCATGACGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGATACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCATTTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCTTTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAAAATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGAGTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCCTCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTTTGGATGGGTTTAATTGGAAGTCCAGCAATATGGTGTGTATTTTTCTTGGCGTCATTATTTTCACTGCATATTCGTTGGGCTTTTGTTTGCACCATCGCATTGTGTATGAATATAGCGAATGTTTATGGTTATATTCGTTGTTGGATGTCTAATATGAATGAAAGTGAATCAAATATTTTGAAAGTAATCAAATCTACAGCAACCAGCANAATGTCTAATTTATGGCCTTTGTCTCAAACTAAATCCGGTTCAAATACCACATCTGGGGGTGGTCTACCATTAGTTGCCTAAGAAAAAAACAACACATCTCACGTATTCCTCTATACATAATGTAAAAAAAGAGACTAAGTAAATATGTTATGATTTTTTGAATTTTAACTGTGATACTACCATATAATTT] [+] EMBL CD081486 [GAGCCTNATTCGGCACCAGGCGTTTGTCAGGGGATATTTTCATTAGCCATGACGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGATACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCATTTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCTTTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAAAATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGAGTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCCTCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTTTGGATGGGTTTAATTGGAAGTCCAGCAATATGGTGTGTATTTTTCTTGGCGTCATTATTTTCACTGCATATTCGTTGGGCTTTTGTTTGCACCATCGCATTGTGTATGAATATAGCGAATGTTTATGGTTATATTCGTTGTTGGATGTCTAATATGAATGAAAGTGAATCAAATATTTTGAAAGTAATCAAATCTACAGCAACCAGCANAATGTCTAATTTATGGCCTTTGTCTCAAACTAAATCCGGTTCAAATACCACATCTGGGGGTGGTCTACCATTAGTTGCCTAAGAAAAAAACAACACATCTCACGTATTCCTCTATACATAATGTAAAAAAAGAGACTAAGTAAATATGTTATGATTTTTTGAATTTTAACTGTGATACTACCATATAATTT] [+] EMBL CD083805 [ gGTTTGTCAGGGCATATTTTCATTAGCCATGATGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGATACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCATTTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCTTTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAAAATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGAGTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCCTCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTTTGGATGG ] consensusID : consensus_4195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CCTCGGGCCAANAATTCGGCACGAGGTTTCAAGAGCTATCGCAGTCAAGTGGTTGGACTCCCTCCTATTGGAAATTACTGAAGACTTGGAACAGTACCGAAGCAATAAGGGGCTATCGCAACAAAATTAATCAGTTTGTATTGGATCGTTACGGTGTTGGATATTGAAACCGCATATTTTCATTAGCCATGATGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGATACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCATTTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCTTTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAAAATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGAGTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCCTCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTTTGGATGGGTTTAATTGGAAGTCCAGCAATATGGTGTGTATTTTTCTTGGCGTCATTATTTTCACTGCATATTCGTTGGGCTTTTGTTTGCA] [+] EMBL CD081950 [CCTCGGGCCAANAATTCGGCACGAGGTTTCAAGAGCTATCGCAGTCAAGTGGTTGGACTCCCTCCTATTGGAAATTACTGAAGACTTGGAACAGTACCGAAGCAATAAGGGGCTATCGCAACAAAATTAATCAGTTTGTATTGGATCGTTACGGTGTTGGATATTGAAACCGCATATTTTCATTAGCCATGATGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGATACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCATTTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCTTTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAAAATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGAGTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCCTCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTTTGGATGGGTTTAATTGGAAGTCCAGCAATATGGTGTGTATTTTTCTTGGCGTCATTATTTTCACTGCATATTCGTTGGGCTTTTGTTTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4195#0 ------------------------------------------------------------ consensus_4195#1 CCTCGGGCCAANAATTCGGCACGAGGTTTCAAGAGCTATCGCAGTCAAGTGGTTGGACTC 60 consensus_4195#0 ------------------------------------------------------------ consensus_4195#1 CCTCCTATTGGAAATTACTGAAGACTTGGAACAGTACCGAAGCAATAAGGGGCTATCGCA 120 consensus_4195#0 ---------------------GAGCCTNATTCGGCACCAGGCGTTTGTCAGGGGATATTT 39 consensus_4195#1 ACAAAATTAATCAGTTTGTATTGGATCGTTACGGTGTTGGATATT-GAAACCGCATATTT 179 * * *** * ** * * * ****** consensus_4195#0 TCATTAGCCATGACGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGAT 99 consensus_4195#1 TCATTAGCCATGATGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGAT 239 ************* ********************************************** consensus_4195#0 ACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCAT 159 consensus_4195#1 ACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCAT 299 ************************************************************ consensus_4195#0 TTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCT 219 consensus_4195#1 TTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCT 359 ************************************************************ consensus_4195#0 TTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAA 279 consensus_4195#1 TTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAA 419 ************************************************************ consensus_4195#0 AATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGA 339 consensus_4195#1 AATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGA 479 ************************************************************ consensus_4195#0 GTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCC 399 consensus_4195#1 GTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCC 539 ************************************************************ consensus_4195#0 TCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTT 459 consensus_4195#1 TCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTT 599 ************************************************************ consensus_4195#0 TGGATGGGTTTAATTGGAAGTCCAGCAATATGGTGTGTATTTTTCTTGGCGTCATTATTT 519 consensus_4195#1 TGGATGGGTTTAATTGGAAGTCCAGCAATATGGTGTGTATTTTTCTTGGCGTCATTATTT 659 ************************************************************ consensus_4195#0 TCACTGCATATTCGTTGGGCTTTTGTTTGCACCATCGCATTGTGTATGAATATAGCGAAT 579 consensus_4195#1 TCACTGCATATTCGTTGGGCTTTTGTTTGCA----------------------------- 690 ******************************* consensus_4195#0 GTTTATGGTTATATTCGTTGTTGGATGTCTAATATGAATGAAAGTGAATCAAATATTTTG 639 consensus_4195#1 ------------------------------------------------------------ consensus_4195#0 AAAGTAATCAAATCTACAGCAACCAGCANAATGTCTAATTTATGGCCTTTGTCTCAAACT 699 consensus_4195#1 ------------------------------------------------------------ consensus_4195#0 AAATCCGGTTCAAATACCACATCTGGGGGTGGTCTACCATTAGTTGCCTAAGAAAAAAAC 759 consensus_4195#1 ------------------------------------------------------------ consensus_4195#0 AACACATCTCACGTATTCCTCTATACATAATGTAAAAAAAGAGACTAAGTAAATATGTTA 819 consensus_4195#1 ------------------------------------------------------------ consensus_4195#0 TGATTTTTTGAATTTTAACTGTGATACTACCATATAATTT 859 consensus_4195#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||