These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 430 fasta sequence [ACACCAGCAGCACCTCGTATAGCAAGTGAATCCTTCAAAACAACTAATTTACAGGACCGACACAGTACATATCGTCCAAGTTTAGATCCAGCATGGATATCTCAAACAAATGAAAGTGGCTCAGAAACAGCATCTATTTTTAGCGTTAGCTCTTCTATGCGGACTCCATCCACGAATAGTGTTAGGAATGGATCAGCGATCTTGCAGTTGTTATTAGCAAACCGTGACAATATTGCGGATTTGGATACCACCAACTTGCCTAGAATGATTGCTCTTCAAAGAGGTCCGAATGGTTTTGGATTTGTTGTACGAGGTAAAAAAGGAGTATCCGGGAATTTTACACCATCTCTTGAGTGTCCAGCATCACAATACCTTGAAAAAGTTGAACCGCATAGTGCAGCAAGTAGGGCAGGTTTGAAAGCAGGTGATT] [+] EMBL CD067050 [ACACCAGCAGCACCTCGTATAGCAAGTGAATCCTTCAAAACAACTAATTTACAGGACCGACACAGTACATATCGTCCAAGTTTAGATCCAGCATGGATATCTCAAACAAATGAAAGTGGCTCAGAAACAGCATCTATTTTTAGCGTTAGCTCTTCTATGCGGACTCCATCCACGAATAGTGTTAGGAATGGATCAGCGATCTTGCAGTTGTTATTAGCAAACCGTGACAATATTGCGGATTTGGATACCACCAACTTGCCTAGAATGATTGCTCTTCAAAGAGGTCCGAATGGTTTTGGATTTGTTGTACGAGGTAAAAAAGGAGTATCCGGGAATTTTACACCATCTCTTGAGTGTCCAGCATCACAATACCTTGAAAAAGTTGAACCGCATAGTGCAGCAAGTAGGGCAGGTTTGAAAGCAGGTGATT] [+] EMBL CD066659 [ACACCAGCAGCACCTCGTATAGCAAGTGAATCCTTCAAAACAACTAATTTACAGGACCGACACAGTACATATCGTCCAAGTTTAGATCCAGCATGGATATCTCAAACAAATGAAAGTGGCTCAGAAACAGCATCTATTTTTAGCGTTAGCTCTTCTATGCGGACTCCATCCACGAATAGTGTTAGGAATGGATCAGCGATCTTGCAGTTGTTATTAGCAAACCGTGACAATATTGCGGATTTGGATACCACCAACTTGCCTAGAATGATTGCTCTTCAAAGAGGTCCGAATGGTTTTGGATTTGTTGTACGAGGTAAAAAAGGAGTATCCGGGAATTTTACACCATCTCATGAGTGTCCAGCATCACAATACCTTG ] consensusID : consensus_4278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence [TCTTGCCAACTAATTCACAGGACCGACACAGTACATATCGTCCAAGTTTATATCCAGCATGGATATCTCATACAAATGAAAGTGGCTCACAAACAGCATCTATTTTTAGCGCTGGCTCTTATATGCGGAGTAGGCCAATAATTATTTG] [+] EMBL CD067608 [TCTTGCCAACTAATTCACAGGACCGACACAGTACATATCGTCCAAGTTTATATCCAGCATGGATATCTCATACAAATGAAAGTGGCTCACAAACAGCATCTATTTTTAGCGCTGGCTCTTATATGCGGAGTAGGCCAATAATTATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4278#0 ACACCAGCAGCACCTCGTATAGCAAGTGAATCCTTCAAAACAACTAATTTACAGGACCGA 60 consensus_4278#1 ----------------------------------TCTTGCCAACTAATTCACAGGACCGA 26 ** ********* ********** consensus_4278#0 CACAGTACATATCGTCCAAGTTTAGATCCAGCATGGATATCTCAAACAAATGAAAGTGGC 120 consensus_4278#1 CACAGTACATATCGTCCAAGTTTATATCCAGCATGGATATCTCATACAAATGAAAGTGGC 86 ************************ ******************* *************** consensus_4278#0 TCAGAAACAGCATCTATTTTTAGCGTTAGCTCTTCTATGCGGACTCCATCCACGAATAGT 180 consensus_4278#1 TCACAAACAGCATCTATTTTTAGCGCTGGCTCTTATATGCGGAGTAGGCCAATAATTATT 146 *** ********************* * ****** ******** * * * * ** * consensus_4278#0 GTTAGGAATGGATCAGCGATCTTGCAGTTGTTATTAGCAAACCGTGACAATATTGCGGAT 240 consensus_4278#1 TG---------------------------------------------------------- 148 consensus_4278#0 TTGGATACCACCAACTTGCCTAGAATGATTGCTCTTCAAAGAGGTCCGAATGGTTTTGGA 300 consensus_4278#1 ------------------------------------------------------------ consensus_4278#0 TTTGTTGTACGAGGTAAAAAAGGAGTATCCGGGAATTTTACACCATCTCTTGAGTGTCCA 360 consensus_4278#1 ------------------------------------------------------------ consensus_4278#0 GCATCACAATACCTTGAAAAAGTTGAACCGCATAGTGCAGCAAGTAGGGCAGGTTTGAAA 420 consensus_4278#1 ------------------------------------------------------------ consensus_4278#0 GCAGGTGATT 430 consensus_4278#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||