These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [ATTTTTATGATCTATATTTATGATATTGCCTGTTTCCAATTTAATCTGTAACTGTGATGGCAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCCCATTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTAATTCTATGTTCACTGATACTGTCTGTAATGTCCTAAGACCTGGGAAATCCTAAGCCCTCTAAGGCTCTAATATCCCCTGATTTATTGAGCTTATAAAAATAAGTAATAAAAACTCTGCTTTACTATCTTTGTAGTGTTGACATCAAATGAACTTTATTAAGAAGTTGCATACATAGTATATAACCTTCATTGCACCATGTATCAGTTGCTTTTTATTGCTGTGATAAAACACCATGAACAAAAGCAAATTATGGAAGAAAGAGACTATTTGGGCTTACAGGGCCAGAGGGGAATCCCGAGAATTCATATCTCAGTCTACAGGAGGAAGCAGCAAGGGTAAACGGAGTGGGGGGGTT] [+] EMBL AI740380 [ATTTTTATGATCTATATTTATGATATTGCCTGTTTCCAATTTAATCTGTAACTGTGATGGCAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCCCATTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTAATTCTATGTTCACTGATACTGTCTGTAATGTCCTAAGACCTGGGAAATCCTAAGCCCTCTAAGGCTCTAATATCCCCTGATTTATTGAGCTTATAAAAATAAGTAATAAAAACTCTGCTTTACTATCTTTGTAGTGTTGACATCAAATGAACTTTATTAAGAAGTTGCATACATAGTATATAACCTTCATTGCACCATGTATCAGTTGCTTTTTATTGCTGTGATAAAACACCATGAACAAAAGCAAATTATGGAAGAAAGAGACTATTTGGGCTTACAGGGCCAGAGGGGAATCCCGAGAATTCATATCTCAGTCTACAGGAGGAAGCAGCAAGGGTAAACGGAGTGGGGGGGTT] consensusID : consensus_428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [ATTTTTATGATCTDNATTTCTGTTTTGCCTGTTTCCAATTTTATCTGTAACTGTGATGGCAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCCATTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTGATTCTATGTTCACTGATACTGTCTGTCATGTCCTAAGACTTGGGAATTCTAAGCCTTCTAAGGCTCTAATATCCCTGGTTTTTTGGAGCTTTAAAATTAAGTTATAAATCTCGGCTTACTATCTTTGAAGTGTTGGACACAATGATTTTTTAAGATTT] [+] EMBL AI964732 [ATTTTTATGATCTDNATTTCTGTTTTGCCTGTTTCCAATTTTATCTGTAACTGTGATGGCAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCCATTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTGATTCTATGTTCACTGATACTGTCTGTCATGTCCTAAGACTTGGGAATTCTAAGCCTTCTAAGGCTCTAATATCCCTGGTTTTTTGGAGCTTTAAAATTAAGTTATAAATCTCGGCTTACTATCTTTGAAGTGTTGGACACAATGATTTTTTAAGATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_428#0 ATTTTTATGATCTATATTTATGATATTGCCTGTTTCCAATTTAATCTGTAACTGTGATGG 60 consensus_428#1 ATTTTTATGATCTDNATTTCTGTT-TTGCCTGTTTCCAATTTTATCTGTAACTGTGATGG 59 ************* **** ** * ***************** ***************** consensus_428#0 CAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCCCA 120 consensus_428#1 CAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCC-A 118 ********************************************************** * consensus_428#0 TTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTAATTCTATGTTCACT 180 consensus_428#1 TTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTGATTCTATGTTCACT 178 ********************************************* ************** consensus_428#0 GATACTGTCTGTAATGTCCTAAGACCTGGGAAATCCTAAGCCCTCTAAGGCTCTAATATC 240 consensus_428#1 GATACTGTCTGTCATGTCCTAAGACTTGGGAA-TTCTAAGCCTTCTAAGGCTCTAATATC 237 ************ ************ ****** * ******* ***************** consensus_428#0 CCCTGATTTATTGAGCTTATAAAAATAAGTAATAAAAACTCTGCTTTACTATCTTTGTAG 300 consensus_428#1 CCTGGTTTTTTGGAGCTT-TAAAATTAAGTTATAA--ATCTCGGCTTACTATCTTTGAAG 294 ** * *** * ****** ***** ***** **** * * ************ ** consensus_428#0 TGTTGACATCAAATGAACTTTATTAAGAAGTTGCATACATAGTATATAACCTTCATTGCA 360 consensus_428#1 TGTTGG-ACACAATGA--TTTTTTAAGATTT----------------------------- 322 ***** * ***** *** ****** * consensus_428#0 CCATGTATCAGTTGCTTTTTATTGCTGTGATAAAACACCATGAACAAAAGCAAATTATGG 420 consensus_428#1 ------------------------------------------------------------ consensus_428#0 AAGAAAGAGACTATTTGGGCTTACAGGGCCAGAGGGGAATCCCGAGAATTCATATCTCAG 480 consensus_428#1 ------------------------------------------------------------ consensus_428#0 TCTACAGGAGGAAGCAGCAAGGGTAAACGGAGTGGGGGGGTT 522 consensus_428#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||