These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence [GCATGGT-TCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTACACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATGACACAGATACATAAATCGTTAAACAAAAGTGATCGATGTTAACATAAACAATTCAGTTTGGAAATCGAAATGAGAGAAGTTTATTAAAAGCTATCTGTGAGTATTAAGTCAGTT] [+] EMBL CD084530 [GCATGGT TCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTACACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATGACACAGATACATAAATCGTTAAACAAAAGTGATCGATGTTAACATAAACAATTCAGTTTGGAAATCGAAATGAGAGAAGTTTATTAAAAGCTATCTGTGAGTATTAAGTCAGTT] [+] EMBL CD084539 [GCATGGTCTCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTACACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATGACCCAGATCCATAAACCGTT ] consensusID : consensus_4297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAACACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGCTGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGACAAAACGCTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTTAAATAAATAAATAAAAATAAATCACACCCAAAGAGTAGGAAAGTAGCCTCACTGGTAACGTTGAATAGGAATGGCACCATGCTCTACAGTCTGACAAATGTAAGGAACTGAATTGCATTTTAGTTGG] [+] EMBL CD084625 [GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAACACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGCTGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGACAAAACGCTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTTAAATAAATAAATAAAAATAAATCACACCCAAAGAGTAGGAAAGTAGCCTCACTGGTAACGTTGAATAGGAATGGCACCATGCTCTACAGTCTGACAAATGTAAGGAACTGAATTGCATTTTAGTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4297#0 GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTA 60 consensus_4297#1 GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAACACATGGCTCAAAATAGTTTGTA 60 ************************************* ********************** consensus_4297#0 ATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATA 120 consensus_4297#1 ATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATA 120 ************************************************************ consensus_4297#0 ACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTT 180 consensus_4297#1 ACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTT 180 ************************************************************ consensus_4297#0 TATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCG 240 consensus_4297#1 TATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCG 240 ************************************************************ consensus_4297#0 ATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAA 300 consensus_4297#1 CTGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAA 300 *********************************************************** consensus_4297#0 TTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTT 360 consensus_4297#1 TTTAACTGACTGAGAACTAGGGTATGACAAAACGCTCATAAATTTCATATGAAGTCTCTT 360 *************************** ****** ************************* consensus_4297#0 CCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTAC 420 consensus_4297#1 CCCCAAATGTAGGCACTTATATAACCACTTTAAATAAATA-AATAA-AAATAAATCACAC 418 ****************************** ******* * ***** ******* * ** consensus_4297#0 ACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATG 480 consensus_4297#1 CCAAAGAGTAGGAAAGTAGCCT-CACTGGTAA-------------CGTTGAATAGGAATG 464 ** *** * * **** *** * * *** *** consensus_4297#0 ACACAGATACATAAATCGTTAAACAAAAGTGATCGATGTTAACATAAACAATTCAGTTTG 540 consensus_4297#1 GCACC-ATGC-TCTACAGTCTGACAAATGTAA--GGAACTGAATTG--CATTTTAGTTGG 518 *** ** * * * ** ***** ** * * * * * ** ** **** * consensus_4297#0 GAAATCGAAATGAGAGAAGTTTATTAAAAGCTATCTGTGAGTATTAAGTCAGTT 594 consensus_4297#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||