These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1371 fasta sequence [TCTCAAGCAGGCTATGTCAACTCCAATTTCTAGTCTGAACAGTTTATTTTCATTCACATCTCCTGCTGTGAAAAGACTTCTTGGTTGGAAACAAGGAGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGATTCACTTGTAAAAAAACTTAAAAAGAAAAAGGGTGCACTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGACATAGTGAATACCCTAGTCTTAGTACTGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATCTAATCTAGGAATGTTCCCGATGACAGACTCAGCAATGCCCTACAATGTAAATTATCCACACAACTTCAGTCATTCTCCGTCTCTTCCTCCCGGAAACAGTGGAACTTCTACAGACAGCACAGTTGCTGGACCTATCCATTCACTTAATAGCTCAAACCTTCAATCTGGTTACCAAACTCAACCCAATCAAGATCCGGCCTCCTCTGGACAAACTATGCATCCAGTCAATTATCAAGAACCTAAATACTGGTGTTCCATTGTTTATTATGAACTAAATAATCGTGTCGGTGAAGCATTTAACGCTTCACAATTAAGCATAATCATTGATGGTTTTACAGATCCATCAAATAATTCAGATCGTTTTTGTCTTGGCCTTTTGTCGAATGTCAACCGAAACTCTACAATCGAGAATACAAGACGTCATATTGGAAAAGGTGTTCATCTTTATTATGTTGGTGGCGAAGTATACGCTGAATGTTTATCGGATAGTAGTATATTTGTACAATCACGTAATTGTAATTATCATCATAATTTTCATCCAACCACAGTGTGTAAAATTCCACCTGGTTGTTCATTGAAAATATTCTCAAATCAAGAATTTGCTCACCTACTTAGTCGTACAGTACATCATGGTTTTGAAGCTGTTTATGAATTAACTAAAATGTGTACAATACGTATGAGTTTTGTAAAAGGTTGGGGTGCTGAATATCATCGACAAGATGTTACATCTACTCCATGTTGGGTTGAAATCCATTTGAATGGTCCATTACAATGGCTTGATCGTGTACTTACACAAATGGGTACACCAAGAAATCCGATTTCATC] [+] EMBL AF215933 [TCTCAAGCAGGCTATGTCAACTCCAATTTCTAGTCTGAACAGTTTATTTTCATTCACATCTCCTGCTGTGAAAAGACTTCTTGGTTGGAAACAAGGAGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGATTCACTTGTAAAAAAACTTAAAAAGAAAAAGGGTGCACTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGACATAGTGAATACCCTAGTCTTAGTACTGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATCTAATCTAGGAATGTTCCCGATGACAGACTCAGCAATGCCCTACAATGTAAATTATCCACACAACTTCAGTCATTCTCCGTCTCTTCCTCCCGGAAACAGTGGAACTTCTACAGACAGCACAGTTGCTGGACCTATCCATTCACTTAATAGCTCAAACCTTCAATCTGGTTACCAAACTCAACCCAATCAAGATCCGGCCTCCTCTGGACAAACTATGCATCCAGTCAATTATCAAGAACCTAAATACTGGTGTTCCATTGTTTATTATGAACTAAATAATCGTGTCGGTGAAGCATTTAACGCTTCACAATTAAGCATAATCATTGATGGTTTTACAGATCCATCAAATAATTCAGATCGTTTTTGTCTTGGCCTTTTGTCGAATGTCAACCGAAACTCTACAATCGAGAATACAAGACGTCATATTGGAAAAGGTGTTCATCTTTATTATGTTGGTGGCGAAGTATACGCTGAATGTTTATCGGATAGTAGTATATTTGTACAATCACGTAATTGTAATTATCATCATAATTTTCATCCAACCACAGTGTGTAAAATTCCACCTGGTTGTTCATTGAAAATATTCTCAAATCAAGAATTTGCTCACCTACTTAGTCGTACAGTACATCATGGTTTTGAAGCTGTTTATGAATTAACTAAAATGTGTACAATACGTATGAGTTTTGTAAAAGGTTGGGGTGCTGAATATCATCGACAAGATGTTACATCTACTCCATGTTGGGTTGAAATCCATTTGAATGGTCCATTACAATGGCTTGATCGTGTACTTACACAAATGGGTACACCAAGAAATCCGATTTCATC] [-] EMBL CD195336 [ TCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGCTTTGCCTCCAGTCCTTGTTCCTCGACATAGTGAATACCCTAGTCTTAGTACTGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATCTAATCTAGGAATGTTCC ] consensusID : consensus_4336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [AGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGACTCACTTGTAAAAAACTTAAAAAGAAAAAGGGTGCCCTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGCCACCCCGCAATACCCTAGTTTTAGTACCGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATTTAATCTAGGAATGTTCCCGATGACAGACCCAGAGCGGGCCGG] [-] EMBL CD200819 [AGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGACTCACTTGTAAAAAACTTAAAAAGAAAAAGGGTGCCCTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGCCACCCCGCAATACCCTAGTTTTAGTACCGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATTTAATCTAGGAATGTTCCCGATGACAGACCCAGAGCGGGCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4336#0 TCTCAAGCAGGCTATGTCAACTCCAATTTCTAGTCTGAACAGTTTATTTTCATTCACATC 60 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 TCCTGCTGTGAAAAGACTTCTTGGTTGGAAACAAGGAGACGAAGAAGAAAAATGGGCTGA 120 consensus_4336#1 ------------------------------------AGACGAAGAAGAAAAATGGGCTGA 24 ************************ consensus_4336#0 AAAAGCGGTTGATTCACTTGTAAAAAAACTTAAAAAGAAAAAGGGTGCACTTGAAGCTTT 180 consensus_4336#1 AAAAGCGGTTGACTCACTTGTAAAAAA-CTTAAAAAGAAAAAGGGTGCCCTTGAAGCTTT 83 ************ ************** ******************** *********** consensus_4336#0 AGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCT 240 consensus_4336#1 AGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCT 143 ************************************************************ consensus_4336#0 CGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGT 300 consensus_4336#1 CGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGT 203 ************************************************************ consensus_4336#0 ATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTT 360 consensus_4336#1 ATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTT 263 ************************************************************ consensus_4336#0 CCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGA 420 consensus_4336#1 CCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGA 323 ************************************************************ consensus_4336#0 AAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGACATAGTG-AATACCCTAGTCTTAGTA 479 consensus_4336#1 AAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGCCACCCCGCAATACCCTAGTTTTAGTA 383 ********************************* ** * *********** ****** consensus_4336#0 CTGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTT 539 consensus_4336#1 CCGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTT 443 * ********************************************************** consensus_4336#0 CAGCATCTAATCTAGGAATGTTCCCGATGACAGACTCAGCAATGCCCTACAATGTAAATT 599 consensus_4336#1 CAGCATTTAATCTAGGAATGTTCCCGATGACAGACCCAGAGCGGGCCGG----------- 492 ****** **************************** *** * ** consensus_4336#0 ATCCACACAACTTCAGTCATTCTCCGTCTCTTCCTCCCGGAAACAGTGGAACTTCTACAG 659 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 ACAGCACAGTTGCTGGACCTATCCATTCACTTAATAGCTCAAACCTTCAATCTGGTTACC 719 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 AAACTCAACCCAATCAAGATCCGGCCTCCTCTGGACAAACTATGCATCCAGTCAATTATC 779 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 AAGAACCTAAATACTGGTGTTCCATTGTTTATTATGAACTAAATAATCGTGTCGGTGAAG 839 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 CATTTAACGCTTCACAATTAAGCATAATCATTGATGGTTTTACAGATCCATCAAATAATT 899 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 CAGATCGTTTTTGTCTTGGCCTTTTGTCGAATGTCAACCGAAACTCTACAATCGAGAATA 959 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 CAAGACGTCATATTGGAAAAGGTGTTCATCTTTATTATGTTGGTGGCGAAGTATACGCTG 1019 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 AATGTTTATCGGATAGTAGTATATTTGTACAATCACGTAATTGTAATTATCATCATAATT 1079 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 TTCATCCAACCACAGTGTGTAAAATTCCACCTGGTTGTTCATTGAAAATATTCTCAAATC 1139 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 AAGAATTTGCTCACCTACTTAGTCGTACAGTACATCATGGTTTTGAAGCTGTTTATGAAT 1199 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 TAACTAAAATGTGTACAATACGTATGAGTTTTGTAAAAGGTTGGGGTGCTGAATATCATC 1259 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 GACAAGATGTTACATCTACTCCATGTTGGGTTGAAATCCATTTGAATGGTCCATTACAAT 1319 consensus_4336#1 ------------------------------------------------------------ consensus_4336#0 GGCTTGATCGTGTACTTACACAAATGGGTACACCAAGAAATCCGATTTCATC 1371 consensus_4336#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||