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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4348 cluster # 4348       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4348#0 length = 563 sequences # 2  
consensus_4348#1 length = 298 sequences # 1  

consensusID : consensus_4348#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 563
fasta sequence
                              [ACCACATACACATGTGACATCACAAATAACATTTCAGCTGCACATGATACAGTCACTCAATCACTCATTCATCAAAGTCTAATTAACGACTAGTTGTTCATAGAAGTCGTTAATTAGACTTTGATGAATGAGTGATTGAGTGACTGAATGAATTGGTTGTTGAGAATTGAGTAGTTTCGCACTGTTATTGTATTTTGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTTTGTTTATTTTTGCGCCTGTGTTGTACCAGGAGAGTGGTGTATTGAGTATGGTTGTAGCATCATTGATGAACAAGGAGGATCTGGTGCAGACGTAAAGGCGAGGATGGGCAAAGCAAGGACCGCATTCCTACAATTGAAGAACATGTGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGATCTTCAACACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCATGGTCAGAAGGTACAAGTATTTATAAACAGTTGTCTACGCAAAATACTCAACATTCACTGGCCGGATACCATC]

[-] EMBL CD063929             [ACCACATACACATGTGACATCACAAATAACATTTCAGCTGCACATGATACAGTCACTCAATCACTCATTCATCAAAGTCTAATTAACGACTAGTTGTTCATAGAAGTCGTTAATTAGACTTTGATGAATGAGTGATTGAGTGACTGAATGAATTGGTTGTTGAGAATTGAGTAGTTTCGCACTGTTATTGTATTTTGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTTTGTTTATTTTTGCGCCTGTGTTGTACCAG                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD087775             [                                                                                                                                                                                                   TGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTTTGTTTATTTTTGAGGTTGTGGCGAAGATGGAGAGTGGTGTATTGAGTATGGTTGTAGCATCATTGATGAACAAGGAGGATCTGGTGCAGACGTAAAGGCGAGGATGGGCAAAGCAAGGACCGCATTCCTACAATTGAAGAACATGTGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGATCTTCAACACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCATGGTCAGAAGGTACAAGTATTTATAAACAGTTGTCTACGCAAAATACTCAACATTCACTGGCCGGATACCATC]


>consensus_4348#0 ACCACATACACATGTGACATCACAAATAACATTTCAGCTGCACATGATACAGTCACTCAA TCACTCATTCATCAAAGTCTAATTAACGACTAGTTGTTCATAGAAGTCGTTAATTAGACT TTGATGAATGAGTGATTGAGTGACTGAATGAATTGGTTGTTGAGAATTGAGTAGTTTCGC ACTGTTATTGTATTTTGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTT TGTTTATTTTTGCGCCTGTGTTGTACCAGGAGAGTGGTGTATTGAGTATGGTTGTAGCAT CATTGATGAACAAGGAGGATCTGGTGCAGACGTAAAGGCGAGGATGGGCAAAGCAAGGAC CGCATTCCTACAATTGAAGAACATGTGGGACTCAAAACAACTCTCAACTAATTTCAAAAT CAGATCTTCAACACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACT ACTACAACCATGGTCAGAAGGTACAAGTATTTATAAACAGTTGTCTACGCAAAATACTCA ACATTCACTGGCCGGATACCATC



consensusID : consensus_4348#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence
                              [AGAAACTCTGGAAGATGTGGAATCATTCACGTACTTGGTTAGTAGCATCATTGATGAACGAGGAGGATCTGATGCAGATGCAAAGGCGAGGATGGGCAAAGCAAGGACGGCATTCCTACAATTGAAGAACATATGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGAATCTTCAGCACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCATCGTCAAGAAGGTACAAGTATTTATGAACAGTTGTCTACGCAAAATACTCAACATTCAC]

[+] EMBL CD191459             [AGAAACTCTGGAAGATGTGGAATCATTCACGTACTTGGTTAGTAGCATCATTGATGAACGAGGAGGATCTGATGCAGATGCAAAGGCGAGGATGGGCAAAGCAAGGACGGCATTCCTACAATTGAAGAACATATGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGAATCTTCAGCACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCATCGTCAAGAAGGTACAAGTATTTATGAACAGTTGTCTACGCAAAATACTCAACATTCAC]


>consensus_4348#1 AGAAACTCTGGAAGATGTGGAATCATTCACGTACTTGGTTAGTAGCATCATTGATGAACG AGGAGGATCTGATGCAGATGCAAAGGCGAGGATGGGCAAAGCAAGGACGGCATTCCTACA ATTGAAGAACATATGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGAATCTTCAG CACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCAT CGTCAAGAAGGTACAAGTATTTATGAACAGTTGTCTACGCAAAATACTCAACATTCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4348#0      ACCACATACACATGTGACATCACAAATAACATTTCAGCTGCACATGATACAGTCACTCAA 60
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      TCACTCATTCATCAAAGTCTAATTAACGACTAGTTGTTCATAGAAGTCGTTAATTAGACT 120
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      TTGATGAATGAGTGATTGAGTGACTGAATGAATTGGTTGTTGAGAATTGAGTAGTTTCGC 180
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      ACTGTTATTGTATTTTGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTT 240
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      TGTTTATTTTTGCGCCTGTGTTGTACCAGGAGAGTGGTGTATTGAGTATGGTTGTAGCAT 300
consensus_4348#1      ----------AGAAACTCTG--GAAGATGTGGAATCATTCACGTACTTGGTTAGTAGCAT 48
                                 *   ** **  * *   *  ** *  *  *   * *  * * *******

consensus_4348#0      CATTGATGAACAAGGAGGATCTGGTGCAGACGTAAAGGCGAGGATGGGCAAAGCAAGGAC 360
consensus_4348#1      CATTGATGAACGAGGAGGATCTGATGCAGATGCAAAGGCGAGGATGGGCAAAGCAAGGAC 108
                      *********** *********** ****** * ***************************

consensus_4348#0      CGCATTCCTACAATTGAAGAACATGTGGGACTCAAAACAACTCTCAACTAATTTCAAAAT 420
consensus_4348#1      GGCATTCCTACAATTGAAGAACATATGGGACTCAAAACAACTCTCAACTAATTTCAAAAT 168
                       *********************** ***********************************

consensus_4348#0      CAGA-TCTTCAACACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAAC 479
consensus_4348#1      CAGAATCTTCAGCACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAAC 228
                      **** ****** ************************************************

consensus_4348#0      TACTACAACCATGGTCA-GAAGGTACAAGTATTTATAAACAGTTGTCTACGCAAAATACT 538
consensus_4348#1      TACTACAACCATCGTCAAGAAGGTACAAGTATTTATGAACAGTTGTCTACGCAAAATACT 288
                      ************ **** ****************** ***********************

consensus_4348#0      CAACATTCACTGGCCGGATACCATC 563
consensus_4348#1      CAACATTCAC--------------- 298
                      **********               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)