These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 563 fasta sequence [ACCACATACACATGTGACATCACAAATAACATTTCAGCTGCACATGATACAGTCACTCAATCACTCATTCATCAAAGTCTAATTAACGACTAGTTGTTCATAGAAGTCGTTAATTAGACTTTGATGAATGAGTGATTGAGTGACTGAATGAATTGGTTGTTGAGAATTGAGTAGTTTCGCACTGTTATTGTATTTTGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTTTGTTTATTTTTGCGCCTGTGTTGTACCAGGAGAGTGGTGTATTGAGTATGGTTGTAGCATCATTGATGAACAAGGAGGATCTGGTGCAGACGTAAAGGCGAGGATGGGCAAAGCAAGGACCGCATTCCTACAATTGAAGAACATGTGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGATCTTCAACACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCATGGTCAGAAGGTACAAGTATTTATAAACAGTTGTCTACGCAAAATACTCAACATTCACTGGCCGGATACCATC] [-] EMBL CD063929 [ACCACATACACATGTGACATCACAAATAACATTTCAGCTGCACATGATACAGTCACTCAATCACTCATTCATCAAAGTCTAATTAACGACTAGTTGTTCATAGAAGTCGTTAATTAGACTTTGATGAATGAGTGATTGAGTGACTGAATGAATTGGTTGTTGAGAATTGAGTAGTTTCGCACTGTTATTGTATTTTGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTTTGTTTATTTTTGCGCCTGTGTTGTACCAG ] [+] EMBL CD087775 [ TGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTTTGTTTATTTTTGAGGTTGTGGCGAAGATGGAGAGTGGTGTATTGAGTATGGTTGTAGCATCATTGATGAACAAGGAGGATCTGGTGCAGACGTAAAGGCGAGGATGGGCAAAGCAAGGACCGCATTCCTACAATTGAAGAACATGTGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGATCTTCAACACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCATGGTCAGAAGGTACAAGTATTTATAAACAGTTGTCTACGCAAAATACTCAACATTCACTGGCCGGATACCATC] consensusID : consensus_4348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [AGAAACTCTGGAAGATGTGGAATCATTCACGTACTTGGTTAGTAGCATCATTGATGAACGAGGAGGATCTGATGCAGATGCAAAGGCGAGGATGGGCAAAGCAAGGACGGCATTCCTACAATTGAAGAACATATGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGAATCTTCAGCACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCATCGTCAAGAAGGTACAAGTATTTATGAACAGTTGTCTACGCAAAATACTCAACATTCAC] [+] EMBL CD191459 [AGAAACTCTGGAAGATGTGGAATCATTCACGTACTTGGTTAGTAGCATCATTGATGAACGAGGAGGATCTGATGCAGATGCAAAGGCGAGGATGGGCAAAGCAAGGACGGCATTCCTACAATTGAAGAACATATGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGAATCTTCAGCACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCATCGTCAAGAAGGTACAAGTATTTATGAACAGTTGTCTACGCAAAATACTCAACATTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4348#0 ACCACATACACATGTGACATCACAAATAACATTTCAGCTGCACATGATACAGTCACTCAA 60 consensus_4348#1 ------------------------------------------------------------ consensus_4348#0 TCACTCATTCATCAAAGTCTAATTAACGACTAGTTGTTCATAGAAGTCGTTAATTAGACT 120 consensus_4348#1 ------------------------------------------------------------ consensus_4348#0 TTGATGAATGAGTGATTGAGTGACTGAATGAATTGGTTGTTGAGAATTGAGTAGTTTCGC 180 consensus_4348#1 ------------------------------------------------------------ consensus_4348#0 ACTGTTATTGTATTTTGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTT 240 consensus_4348#1 ------------------------------------------------------------ consensus_4348#0 TGTTTATTTTTGCGCCTGTGTTGTACCAGGAGAGTGGTGTATTGAGTATGGTTGTAGCAT 300 consensus_4348#1 ----------AGAAACTCTG--GAAGATGTGGAATCATTCACGTACTTGGTTAGTAGCAT 48 * ** ** * * * ** * * * * * * * ******* consensus_4348#0 CATTGATGAACAAGGAGGATCTGGTGCAGACGTAAAGGCGAGGATGGGCAAAGCAAGGAC 360 consensus_4348#1 CATTGATGAACGAGGAGGATCTGATGCAGATGCAAAGGCGAGGATGGGCAAAGCAAGGAC 108 *********** *********** ****** * *************************** consensus_4348#0 CGCATTCCTACAATTGAAGAACATGTGGGACTCAAAACAACTCTCAACTAATTTCAAAAT 420 consensus_4348#1 GGCATTCCTACAATTGAAGAACATATGGGACTCAAAACAACTCTCAACTAATTTCAAAAT 168 *********************** *********************************** consensus_4348#0 CAGA-TCTTCAACACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAAC 479 consensus_4348#1 CAGAATCTTCAGCACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAAC 228 **** ****** ************************************************ consensus_4348#0 TACTACAACCATGGTCA-GAAGGTACAAGTATTTATAAACAGTTGTCTACGCAAAATACT 538 consensus_4348#1 TACTACAACCATCGTCAAGAAGGTACAAGTATTTATGAACAGTTGTCTACGCAAAATACT 288 ************ **** ****************** *********************** consensus_4348#0 CAACATTCACTGGCCGGATACCATC 563 consensus_4348#1 CAACATTCAC--------------- 298 ********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||