These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_44#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [CAACCTCAACAAGTCAATATGCGACCGGATTGTTCCAAATGTTATTACGCTAAAATATATCATGTACCATTCATAGATTTCAGCTTTTCATTGTATGATCTAAATTTATCAGTTTTAAACTTATTCCTAAAACACAGTCTGATAATTAAAACAAAACCCAGAGCTGAACGAGATTTTTAAGTGGGGAAAATATAAAAAAAAACCACTCGATATTTGAAAGAAATTATGGCATAAAGTAAAGTTTAAAATCTTAATCGATAAAAAGCTCTTTTATAAAACAAAACAATTTAGCGTAGCCATGTGGTTTATGCTACATATGTCGACAGACATAAGTAATATATTATACCAATCAGAAGTGGAATGCCCGGCAGCAAAAGGTTGGGAAGGCCTAATCGAAGAGAACGGGAACGGAGAGTAGTTGCTACGGCAAAGAAGGAACGACGAAGTCAGAGATATTTGATGGAGGGTTTGAAATGAAGTACTGGACGTATGGTTTTTATATTTTACCAAAGAACTCTGTAATTNTATATTAAAATACA] [+] EMBL CD122744 [CAACCTCAACAAGTCAATATGCGACCGGATTGTTCCAAATGTTATTACGCTAAAATATATCATGTACCATTCATAGATTTCAGCTTTTCATTGTATGATCTAAATTTATCAGTTTTAAACTTATTCCTAAAACACAGTCTGATAATTAAAACAAAACCCAGAGCTGAACGAGATTTTTAAGTGGGGAAAATATAAAAAAAAACCACTCGATATTTGAAAGAAATTATGGCATAAAGTAAAGTTTAAAATCTTAATCGATAAAAAGCTCTTTTATAAAACAAAACAATTTAGCGTAGCCATGTGGTTTATGCTACATATGTCGACAGACATAAGTAATATATTATACCAATCAGAAGTGGAATGCCCGGCAGCAAAAGGTTGGGAAGGCCTAATCGAAGAGAACGGGAACGGAGAGTAGTTGCTACGGCAAAGAAGGAACGACGAAGTCAGAGATATTTGATGGAGGGTTTGAAATGAAGTACTGGACGTATGGTTTTTATATTTTACCAAAGAACTCTGTAATTNTATATTAAAATACA] consensusID : consensus_44#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [GGAACAATCCGGTCGCATATTGACTTGTTGAGGTTGTTTTTAATGCGAGGAATAAAAGTTAAACTAGAGAAATTAGAATATGTGAAAAAAGATAGTCAAGGAAAACAATATGAGTACTATGATTCATATTGTTTCTCATCTATTTTTCCCTTATCCATGCATATTGGTTGTTTTTTGGTCTTCCCATTGATGTTTAGGACTGCAACTGACCAATCTCTTTTGGCTGATGTGCATCCTGTACGGAATGCCTCGATATATTGCCGTTCGGTCACAGAAATTTTAAGCATAAGTGAATGGTAGCTAGCAATGGAATCCAGGACGCGCGTTTCGTCCTATGTGAGACTTGTCGGCTGGGTGTTTTTGAATTCCATAGTTGATATTCACTCCCGGGATATAGGATGCAGGCACATTTCACTGAGTCCC] [+] EMBL CD120192 [GGAACAATCCGGTCGCATATTGACTTGTTGAGGTTGTTTTTAATGCGAGGAATAAAAGTTAAACTAGAGAAATTAGAATATGTGAAAAAAGATAGTCAAGGAAAACAATATGAGTACTATGATTCATATTGTTTCTCATCTATTTTTCCCTTATCCATGCATATTGGTTGTTTTTTGGTCTTCCCATTGATGTTTAGGACTGCAACTGACCAATCTCTTTTGGCTGATGTGCATCCTGTACGGAATGCCTCGATATATTGCCGTTCGGTCACAGAAATTTTAAGCATAAGTGAATGGTAGCTAGCAATGGAATCCAGGACGCGCGTTTCGTCCTATGTGAGACTTGTCGGCTGGGTGTTTTTGAATTCCATAGTTGATATTCACTCCCGGGATATAGGATGCAGGCACATTTCACTGAGTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_44#0 CAACCTCAACAAGTCAATATGCGACCGGATTGTTCCAAATGTTATTACGCTAAAATATAT 60 consensus_44#1 ------------------------------------------------------------ consensus_44#0 CATGTACCATTCATAGATTTCAGCTTTTCATTGTATGATCTAAATTTATCAGTTTTAAAC 120 consensus_44#1 --------------------------GGAACAATCCGGTCGCATATTGACT-TGTTGAGG 33 * * * ** * ** * * ** * consensus_44#0 TTATTCCTAAAACACAGTCTGATAATTAAAACAAAACCCAGAGCTGAACGAGATTTTTAA 180 consensus_44#1 TTGTTTTTAATGCGAGGAATAAAAGTTAAA-------CTAGAGA-AATTAGAATATGTGA 85 ** ** *** * * * * * ***** * **** * ** * * * consensus_44#0 GTGGGGAAAATATAAAAAAAAACCACTCGATATTTGAAAGAAATTATGGCATAAAGTAAA 240 consensus_44#1 AAAAAGATAGTCAAGGAAAACAATATGAGTACTATGATTCATATTGTTTCTCA---TCTA 142 ** * * * **** * * * * *** * *** * * * * * consensus_44#0 GTTTAAAATCTTAATCGATAAAAA--GCTCTTTTATAAAACAAAACAATTTAGCGTAGCC 298 consensus_44#1 TTTTT---CCCTTATCCATGCATATTGGTTGTTTTTTGGTCTTCCCATTGATGTTTAGGA 199 *** * * *** ** * * * * *** * * ** * * *** consensus_44#0 ATGTGGTTTATGCTACATATGTCGACAGACATAAGTAATATATTATACCAATCAGAAGTG 358 consensus_44#1 CTGCAACTGAC-CAATCTCTTTTGGCTGATGTGCATCCTGTACGGAATGCCTCGATATAT 258 ** * * * * * * * * * ** * * * ** * ** * consensus_44#0 GAATGCCCGGCAGCAAAAGGTTGGGAAGGCCTAATCGAAGAGAACGGGAACGGAGAGTAG 418 consensus_44#1 TGCCGTTCGGTCACAGAAATTTT---AAGCAT-----AAGTGAATGGTAGCTAGCAATGG 310 * *** ** ** ** * ** * *** *** ** * * * * * consensus_44#0 TTGCTACGGCAAAGAAGGAACGACGAAGTCAGAGATATTTGATGGAGGGTTTGAAATGAA 478 consensus_44#1 AATCCAGGACGCGCGTTTCGTC-CTATGTGAGACTTGTCGGCTGGGTGTTTTTGAATTCC 369 * * * * * * ** *** * * * *** * *** *** consensus_44#0 GTACTGGACGTATGGTTTTTATATTTTACCAAAGAACTCTGTAATTNTATATTAAAATAC 538 consensus_44#1 ATAGTTGATATTCACTCCCGGGATAT------AGGATGCAGGCACATTTCACTGAGTCCC 423 ** * ** * * ** * ** * * * * * * * * * consensus_44#0 A 539 consensus_44#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||