These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4438#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence [ATGAAATTCGAGAAAAGCTTGCTAAGACCTATAAAACTTCCCCGGATGTCGTTTTNGCATATGGCTTCCGGGCACAGTGGTCATTAAGCCCTCAACTATTTCAAACTTATCATGAATGACCTTAGCCAGAGGTGCTAAACAATTAGTTGTACATGATGCGTTAGAAACCACGGACATAGACTTTTCATACGAATTTTCATTCACACCAACAACGAACATGGGTGCATCTGCAGAAGGTGCAGATATTATGACCTTTTTAGCTCGATTATTTTTAATATGAGCCTGAGCTTTATCAATGGTCGTAAAGACTCCAGTAGACTCAACGACATATTCAGCCCCGTCCTTATCCCACGGGATGTTTGCTGGATCTCTTTCACAATGAACTGATATTAACTTCCCATTGACTTTTAACTTTCCGTTTTCAGTCGAAACCTCGCCTGGAAATGTCCCATGAGTGGAATCACGTTTTATCATGTACACCACATACTATCCACGGTGTTCTTGAGGAAAGCTGCACGAAGTACAAGTCTCCCGATACGACCAAAACCGTTAATACCAACCTTTGCTCTCGACATCTTGAAGTATATCGTACGT] [-] EMBL CD142715 [ATGAAATTCGAGAAAAGCTTGCTAAGACCTATAAAACTTCCCCGGATGTCGTTTTNGCATATGGCTTCCGGGCACAGTGGTCATTAAGCCCTCAACTATTTCAAACTTATCATGAATGACCTTAGCCAGAGGTGCTAAACAATTAGTTGTACATGATGCGTTAGAAACCACGGACATAGACTTTTCATACGAATTTTCATTCACACCAAC ] [+] EMBL CD116105 [ AACTATTTCAAACTTATCATGAATGACCTTAGCCAGAGGTGCTAAACAATTAGTTGTACATGATGCGTTAGAAACCACGGACATAGACTTTTCATACGAATTTTCATTCACACCAACAACGAACATGGGTGCATCTGCAGAAGGTGCAGATATTATGACCTTTTTAGCTCGATTATTTTTAATATGAGCCTGAGCTTTATCAATGGTCGTAAAGACTCCAGTAGACTCAACGACATATTCAGCCCCGTCCTTATCCCACGGGATGTTTGCTGGATCTCTTTCACAATGAACTGATATTAACTTCCCATTGACTTTTAACTTTCCGTTTTCAGTCGAAACCTCGCCTGGAAATGTCCCATGAGTGGAATCACGTTTTATCATGTACACCACATACTATCCACGGTGTTCTTGAGGAAAGCTGCACGAAGTACAAGTCTCCCGATACGACCAAAACCGTTAATACCAACCTTTGCTCTCGACATCTTGAAGTATATCGTACGT] consensusID : consensus_4438#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence [CTCCCAATCATTAGTTAACGACTTGTAAAACTCTGCATACTCTTCTGTAGTTATATCTTCGGGATTGCGCGTCCAGAGCGGCTTAAGCTTGTTCAACTGTTCTTCCTCAGTATACTTCTCCGTCACCTTCTTTTTTTTCTTCTTCTCCTTATTCTCGTCTTCCTTTCTTCAAGATATTCTAGCTGGTCTTCTTTCAGATGTAATATCACCTTAGTGCCACGTTTCGGCATCTCACTGTCATCTGGTGCAATCGTGAAAGTTCCACCAGCGGACGAATCCCAAATGTACTGGTCGTCATCATTATTCTTCGTCA] [+] EMBL CD165853 [CTCCCAATCATTAGTTAACGACTTGTAAAACTCTGCATACTCTTCTGTAGTTATATCTTCGGGATTGCGCGTCCAGAGCGGCTTAAGCTTGTTCAACTGTTCTTCCTCAGTATACTTCTCCGTCACCTTCTTTTTTTTCTTCTTCTCCTTATTCTCGTCTTCCTTTCTTCAAGATATTCTAGCTGGTCTTCTTTCAGATGTAATATCACCTTAGTGCCACGTTTCGGCATCTCACTGTCATCTGGTGCAATCGTGAAAGTTCCACCAGCGGACGAATCCCAAATGTACTGGTCGTCATCATTATTCTTCGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4438#0 ATGAAATTCGAGAAAAGCTTGCTAAGACCTATAAAACTTCCCCGGATGTCGTTTTNGCAT 60 consensus_4438#1 ------------------------------------------------------------ consensus_4438#0 ATGGCTTCCGGGCACAGTGGTCATTAAGCCCTCAACTATTTCAAACTTATCATGAATGAC 120 consensus_4438#1 ------------------------------------------------------------ consensus_4438#0 CTTAGCCAGAGGTGCTAAACAATTAGTTGTACATGATGCGTTAGAAACCACGGACATAGA 180 consensus_4438#1 --------------------------CTCCCAATCATTAGTTA---ACGACTTGTA-AAA 30 * ** ** **** ** ** * * * consensus_4438#0 CTTTTCATACGAATTTTCATTCACACCAACAACGAACATGGGTGCATCTGCAGAAGGTGC 240 consensus_4438#1 CTCTGCATACTCTTCTGTAGTTATATCTTCGG-------GATTGCGCGTCCAGA----GC 79 ** * ***** * * * * * * * * * *** * **** ** consensus_4438#0 AGATATTATGACCTTTTTAGCTCGATTATTTTTAATATGAGCCTGAGCTTTATCAATGGT 300 consensus_4438#1 GGCT----TAAGCTTGTTCAACTGTTCTTCCTCAGTATA---------CTTCTCCGTCAC 126 * * * * *** ** * * * * * *** ** ** * consensus_4438#0 CGTAAAGACTCCAGTAGACTCAACGACATATTCAGCCCCGTCCTTATCCCACGGGATGTT 360 consensus_4438#1 CTT-----CTTTTTTTTCTTCTTCTCCTTATTCT-CGTCTTCCTTTCTTCAAGATATTCT 180 * * ** * ** * * ***** * * ***** ** * ** * consensus_4438#0 TGCTGGATCTCTTTCACAATGAACTGATATTAACTTCCCATTGACTTTTAACTTTCCGTT 420 consensus_4438#1 AGCTGGTCTTCTTTCA----GATGTAATATCACCTTAGTGCCACGTTTCGGCATCTCACT 236 ***** ******* ** * **** * *** *** * * * * consensus_4438#0 TTCAGTCGAAACCTCGCCTGGAAATGTCCCATGAGTGGAATCACGTTTTATCATGTACAC 480 consensus_4438#1 GTCATCTGGTGC---AATCGTGAAAGTTCCACCAGCGGACGAA-----TCCCAAATGTAC 288 *** * * * ** ** *** ** *** * * ** * ** consensus_4438#0 CACATACTATCCACGGTGTTCTTGAGGAAAGCTGCACGAAGTACAAGTCTCCCGATACGA 540 consensus_4438#1 TGGTCGTCATCATTATTCTTCGTCA----------------------------------- 313 *** * *** * * consensus_4438#0 CCAAAACCGTTAATACCAACCTTTGCTCTCGACATCTTGAAGTATATCGTACGT 594 consensus_4438#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||