These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [GTCCGCATCGGCTACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCGAACGTCACCTCAATCTGAGGAGTACCACGAGGAGCAGGTGGGATACCTGATAGTTCGAACTTACCAAGCAGATTGTTGTCCTTAGTCAGTGCACGCCCGCCCTCGAACACCTGGATAAGCACACCAGGTTGGTTGTCCGAGTACGTCGTGAACGTTTGAGTCTGTTTCGTCGGAATTGTCGTGTTACGCTTAATCAAAGCCGTCATCACACCTCCAGCCGTTTCAAGACCCAATGATGGTGCAGCTGTGCAGGCAGCTATTCTAAGTGGTGATAAGTGTGAGGCTGTGCAGGACTTGTTGTTGCTTGACGTAGCTCCACTATCATTG] [+] EMBL CD111686 [GTCCGCATCGGCTACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCGAACGTCACCTCAATCTGAGGAGTACCACGAGGAGCAGGTGGGATACCTGATAGTTCGAACTTACCAAGCAGATTGTTGTCCTTAGTCAGTGCACGCCCGCCCTCGAACACCTGGATAAGCACACCAGGTTGGTTGTCCGAGTACGTCGTGAACGTTTGAGTCTGTTTCGTCGGAATTGTCGTGTTACGCTTAATCAAAGCCGTCATCACACCTCCAGCCGTTTCAAGACCCAATGATGGTGCAGCTGTGCAGGCAGCTATTCTAAGTGGTGATAAGTGTGAGGCTGTGCAGGACTTGTTGTTGCTTGACGTAGCTCCACTATCATTG] consensusID : consensus_4441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 379 fasta sequence [TGTCTGGNAGAAAGCGAGCATTCTGGTAGAACGAGCATTCAACTCCTCAAATCGTGCACGAGTGATCACCGTGTAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTTGTCTGGGCACTCGAACTCAATGTACGTTTCGCACGCTCACACGCTGTCCTCAGACGACGCAATGCACGCTTATTGCTACGAATGTCTTTATTGTATTTCTTCTGGAACTCTTTCACAAAGTGATCCACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCAAACGTCACCTCAATC] [+] EMBL CD062898 [TGTCTGGNAGAAAGCGAGCATTCTGGTAGAACGAGCATTCAACTCCTCAAATCGTGCACGAGTGATCACCGTGTAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTTGTCTGGGCACTCGAACTCAATGTACGTTTCGCACGCTCACACGCTGTCCTC ] [+] EMBL CD112419 [ TCAACTCCTCAAATCGTGCACGAGTGATCACCGTGTAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTCTGGGCACTCGAACTCGATGTACGTTTCGCACGTTCACACGCTGTCCTCAGACGACGCAATGCACGCTTATTGCTACGAATGTCTTTATTGTATTTCTTCTGGAACTCTTTCACAAAGTGATCCACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCAAACGTCACCTCAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4441#0 GTCCGCATCGGCTACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGTCATTTGT 60 consensus_4441#1 ------------------------------------------------------------ consensus_4441#0 GATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACC 120 consensus_4441#1 -----------TGT-CTGGNAGAAAGCGAGCATTCTGGTAGAACGAGCATTCA----ACT 44 *** *** ** * * ** * * **** ** consensus_4441#0 GTTCGCATCTATATCGAACG-TCACCTCAATCTGAGGAGTACCACGAGG-AGCAGGTGGG 178 consensus_4441#1 CCTCAAATCGTGCACGAGTGATCACCGTGTAAAAATCAATACCATCACACAACGAGTCAA 104 ** *** *** * ***** * * ***** * * * ** consensus_4441#0 ATACCTGATAGTTCGAACTTACCAAGCAGATTGTTGTCCTTAGTCAGTGCACGC-CCGCC 237 consensus_4441#1 TCTCCAGATTTGTCTGGGCACTCGAACTCAATGT-ACGTTTCGCACGCTCACACGCTGTC 163 ** *** ** * * * * *** ** * * *** * * * * consensus_4441#0 CTCGAACACCTGGATAAGCACACCAGGTTGGTTGTCCGAGTACGTCGTGAACGTT-TGAG 296 consensus_4441#1 CTCAGACGACGCAAT--GCACGCTTATTGCTACGAATGTCTTTATTGTATTTCTTCTGGA 221 *** ** * ** **** * * * * * * ** ** ** consensus_4441#0 TCTGTTTCGTCGGAATTGTCGTGTTACGCTTAATCAAAGCCGTCATCACAC--CTCCAGC 354 consensus_4441#1 ACTCTTTCACAAAGTGATCCACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGT 281 ** **** * * **** **** * ** ** ** * * * consensus_4441#0 CGTTTCAAGACCCAATGATGGTGCAGCTGTGCAGGCAGCTATTCTAAGTGGTGATAAGTG 414 consensus_4441#1 CATTTGTGATCGTTATCTTGTT-CTGCT-TCCCAGTACCCTTGTCAACAGCAGATACGTT 339 * *** * ** ** * * *** * * * * * * ** * **** ** consensus_4441#0 TGAGGCTGTGCAGGACTTGTTGTTGCTTGACGTAGCTCCACTATCATTG 463 consensus_4441#1 CAGAA---TACCGTTCGCATCTATATCAAACGTCACCTCAATC------ 379 * * * * * * **** * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||