cluster # 4444

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Schistosoma mansoni
cluster # 4444 cluster # 4444 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4444#0 length = 348 sequences # 2

consensus_4444#1 length = 217 sequences # 1

consensusID : consensus_4444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 348
fasta sequence

                              [AGATATGAAAAGGATTGTGCAGGACAAAGCTGTATGGAGAATACTGGTGTGCGGCCTATTCTCCTCCACGAGGAGTAACAGGCGTAAGTAAGTTGATGTATAGCTACCTAAGTCCAAAGAAATCAGCTAAATACATATATCAAGTTACATATATATCGTTATGAGACCAAGCTAACAAACATTGATTTTAGAAGCCGAGTAAGAGGCAATAATTGTTAACTGCTTGGAGACGTTGCAAACAGAATTTTTGTACAAAACAAGCAGTTTTTAAAATTGATAAGAGAAAATACCAATTTCACTAATTTGCTTTGAGCTAATTACATGATTTCACCATAACTGTAAAAACAG]

[+] EMBL CD171486             [AGATATGAAAAGGATTGTGCAGGACAAAGCTGTATGGAGAATACTGGTGTGCGGCCTATTCTCCTCCACGAGGAGTAACAGGCGTAAGTAAGTTGATGTATAGCTACCTAAGTCCAAAGAAATCAGCTAAATACATATATCAAGTTACATATATATCGTTATGAGACCAAGCTAACAAACATTGATTTTAGAAGCCGAGTAAGAGGCAATAATTGTTAACTGCTTGGAGACGTTGCAAACAGAATTTTTGTACAAAACAAG                                                                                       ]
[+] EMBL CD181468             [            GATTGTGCAGGACAAAGCTGTATGGAGAATACTGGTGTGCGGCCTATTCTCCTCCACGAGGAGTAACAGGCGTAAGTAAGTTGATGTATAGCTACCTAAGTCCATAGAAATCAGCTAAATACATATATCAAGTTACATATATATCGTTATGAAACCAAGCTAACAAACATTGATTTTAGAAGCCGAGTAAGAGGCAATAATTGTTAACTGCTTGGAGACGTTGCAAACAGAATTTTTGTACAAAACAAGCAGTTTTTAAAATTGATAAGAGAAAATACCAATTTCACTAATTTGCTTTGAGCTAATTACATGATTTCACCATAACTGTAAAAACAG]




>consensus_4444#0
AGATATGAAAAGGATTGTGCAGGACAAAGCTGTATGGAGAATACTGGTGTGCGGCCTATT
CTCCTCCACGAGGAGTAACAGGCGTAAGTAAGTTGATGTATAGCTACCTAAGTCCAAAGA
AATCAGCTAAATACATATATCAAGTTACATATATATCGTTATGAGACCAAGCTAACAAAC
ATTGATTTTAGAAGCCGAGTAAGAGGCAATAATTGTTAACTGCTTGGAGACGTTGCAAAC
AGAATTTTTGTACAAAACAAGCAGTTTTTAAAATTGATAAGAGAAAATACCAATTTCACT
AATTTGCTTTGAGCTAATTACATGATTTCACCATAACTGTAAAAACAG

consensusID : consensus_4444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [CATCCAACATCAAATTATATCAAAAGTTATGAAAACTTATTCAAATAATTTGTCAACTGAAATGAATAAATCCCTATTAGTAGTCGTGAAAATATCTCCATCATTACTCGTTCTGAACTTACACAGAAAATGAAATAAATAGTATCATTCACAGTGTGGGGAGTAGTGTAACGTCGTGTACTATATTACACCTACATAGTTTATTCTAGTTTCTGGA]

[+] EMBL AA958308             [CATCCAACATCAAATTATATCAAAAGTTATGAAAACTTATTCAAATAATTTGTCAACTGAAATGAATAAATCCCTATTAGTAGTCGTGAAAATATCTCCATCATTACTCGTTCTGAACTTACACAGAAAATGAAATAAATAGTATCATTCACAGTGTGGGGAGTAGTGTAACGTCGTGTACTATATTACACCTACATAGTTTATTCTAGTTTCTGGA]




>consensus_4444#1
CATCCAACATCAAATTATATCAAAAGTTATGAAAACTTATTCAAATAATTTGTCAACTGA
AATGAATAAATCCCTATTAGTAGTCGTGAAAATATCTCCATCATTACTCGTTCTGAACTT
ACACAGAAAATGAAATAAATAGTATCATTCACAGTGTGGGGAGTAGTGTAACGTCGTGTA
CTATATTACACCTACATAGTTTATTCTAGTTTCTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4444#0      AGATATGAAAAGGATTGTGCAGGACAAAGCTGTATGGAGAATACTGGTGTGCGGCCTATT 60
consensus_4444#1      ------------------------------------------------------------
                                                                                  

consensus_4444#0      CTCCTCCACGAGGAGTAACAGGCGTAAGTAAGTTGATGTATAGCTACCTAAGTCCAAAGA 120
consensus_4444#1      --------------------------------------------CATCCAACATC----A 12
                                                                   * * **   *    *

consensus_4444#0      AATCAGCTAAATACATATATCAAGTTACATATATATCGTTATGAGACCAAGCTAACAAAC 180
consensus_4444#1      AATTATATCAAAAGTTATGAAAACTTATTCAAATAAT-TTGTCAACTGAAATGAATAAA- 70
                      *** *  * ** *  ***   ** ***   * ***   ** * *    **   ** *** 

consensus_4444#0      ATTGATTTTAGAAGCCGAGTAAGAGGCAATAATTGTTAACTGCTTGGAG---ACGTTGCA 237
consensus_4444#1      -TCCCTATTAGTAGTCGTG-AAAATATCTCCATCATTACTCGTTCTGAACTTACACAGAA 128
                       *   * **** ** ** * ** *       **  ***   * *  **    **   * *

consensus_4444#0      AACAGAATTTTTGTACAAAACAAGCAGTTTTTAAAATTG-ATAAGAGAAAATACCA-ATT 295
consensus_4444#1      AATGAAATAAATA-GTATCATTCACAGTGTGGGGAGTAGTGTAACGTCGTGTACTATATT 187
                      **   ***   *    *  *    **** *    * * *  ***       *** * ***

consensus_4444#0      TCACTAATTTGCTTTGAGCTAATTACATGATTTCACCATAACTGTAAAAACAG 348
consensus_4444#1      ACACCTACATAGTTTATTCTAGTTTCTGGA----------------------- 217
                       ***  *  *  ***   *** ** *  **