These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [AGGGAAATGATCCATATTTTATTGCATTGCGTTATGTCTGAAATGCCTTTCAATCGTTTCTATCCACGTGTATTAGGTGGTATTCTAAATTGTCATCGACGATTTTTGATGATGATCAAGTGTGGATTTTGGGATATTTTAAATAATAATAATTTAACAGTTGAAGCTAAATCTAATGCTGGTCGAGCATTAGGTTTACTTTGTCTTGTTTATAATTCTCCATTAACTGTATTAAAGGTGAGGTTTATTTATTTTTATTGTGTTCTACATACTCTTTGTTTTGTTTTTGTTTTACGACAAACAACACAATACATGGAGCTAACTCTTTTCAATGTTACAAAATTATGAGTCTTACTTACTTACATCAACATTCTCTATCCAACCCTGTCCTGGACAGTCCTTTTCAGTTCTTTCCAATTAACATTCATTNTTTTCATATCTGTTTCTATCTCCCGACATAA] [+] EMBL CD145207 [AGGGAAATGATCCATATTTTATTGCATTGCGTTATGTCTGAAATGCCTTTCAATCGTTTCTATCCACGTGTATTAGGTGGTATTCTAAATTGTCATCGACGATTTTTGATGATGATCAAGTGTGGATTTTGGGATATTTTAAATAATAATAATTTAACAGTTGAAGCTAAATCTAATGCTGGTCGAGCATTAGGTTTACTTTGTCTTGTTTATAATTCTCCATTAACTGTATTAAAGGTGAGGTTTATTTATTTTTATTGTGTTCTACATACTCTTTGTTTTGTTTTTGTTTTACGACAAACAACACAATACATGGAGCTAACTCTTTTCAATGTTACAAAATTATGAGTCTTACTTACTTACATCAACATTCTCTATCCAACCCTGTCCTGGACAGTCCTTTTCAGTTCTTTCCAATTAACATTCATTNTTTTCATATCTGTTTCTATCTCCCGACATAA] consensusID : consensus_4478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [CTTTTAACAAACGCGCATCTTGGATTCTACTGCTAGCCACTATCCATCTTTGCTTATATTTATTTGGATAGATTTTTTTGTTCTCTGAGTTGGATGGTTTGATTTTTTAGTTTTCAGCGTCCTTCTGATAACATCATCAGTACAAACGTCTACTTAAGAAACTAAGTGGAAATTTATTCTTATAACTATAAAATATGAAATTCAACCAACACCAAGATCAGAATTTTCAATACAAAAGTCAAGACAGTTCTACTGTGTGGGACGGAGACGTGGAGAACTACGAAAACCATCGTCTAGATAATGCAAGTGTTTATTAACAGTTGTCTAGGTAAGATACTTCGGATCCGTTTGCCAGACACTATCATCGACAAGTTACTGTGAGAGACAACAAACCAGATTCCATTTAATGGAGGAAGAAATCATGAAGAAGCACTGGAAGTG] [+] EMBL CD086222 [CTTTTAACAAACGCGCATCTTGGATTCTACTGCTAGCCACTATCCATCTTTGCTTATATTTATTTGGATAGATTTTTTTGTTCTCTGAGTTGGATGGTTTGATTTTTTAGTTTTCAGCGTCCTTCTGATAACATCATCAGTACAAACGTCTACTTAAGAAACTAAGTGGAAATTTATTCTTATAACTATAAAATATGAAATTCAACCAACACCAAGATCAGAATTTTCAATACAAAAGTCAAGACAGTTCTACTGTGTGGGACGGAGACGTGGAGAACTACGAAAACCATCGTCTAGATAATGCAAGTGTTTATTAACAGTTGTCTAGGTAAGATACTTCGGATCCGTTTGCCAGACACTATCATCGACAAGTTACTGTGAGAGACAACAAACCAGATTCCATTTAATGGAGGAAGAAATCATGAAGAAGCACTGGAAGTG] consensusID : consensus_4478#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [CGGACGAGGTCGTGGTCGTGAAGTCGCAACAGAAGAATGGAAGCCTGTTACCCAGTTGGGACGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCGATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTTAAAATCATGCCAGTTCAAAAGCAGACTTGGTGCTGGCCAGAGAACCCGCTTTAAAGCAATTGTTGCAATGGGAGACC] [+] EMBL CD155453 [CGGACGAGGTCGTGGTCGTGAAGTCGCAACAGAAGAATGGAAGCCTGTTACCCAGTTGGGACGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCGATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTTAAAATCATGCCAGTTCAAAAGCAGACTTGGTGCTGGCCAGAGAACCCGCTTTAAAGCAATTGTTGCAATGGGAGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4478#0 AGGGAAATGATCCATATTTTATTGCATTGCGTTATGTCTGAAATGCCTTTCAATCGTTTC 60 consensus_4478#2 ------------------------------------------------------------ consensus_4478#1 CTTTTAACAAACGCGCATCTTGGATTCTACTGCTAGCCACTATCCATCTTTGCTTATATT 60 consensus_4478#0 TATCCACGTGTATTAGGTGGTATTCTAAATTGTCATCGACGATTTTTGATGATGATCAAG 120 consensus_4478#2 ------------------------------------------------------------ consensus_4478#1 TATTTGGATAGATTTTTTTGTTCTCTGAGTTGGATGGTTTGATTTTTTAGTTTTCAGCGT 120 consensus_4478#0 TGTGGATTTTGGGATATTTTAAATAATAATAATTTAACAGTTGAAGCTAAA-TCTAATGC 179 consensus_4478#2 -------------------------------------CGGACGAGGTCG-----TGGTCG 18 consensus_4478#1 CCTTCTGATAACATCATCAGTACAAACGTCTACTTAAGAAACTAAGTGGAAATTTATTCT 180 * * * * consensus_4478#0 TGGTCGAGCATTAGGTTTACTTTGTCTTGTTTATAATTCTCCATTAACTGTATTAAAGGT 239 consensus_4478#2 TGAAGTCGCAACAGAAGAATGGAAGCCTGTTACCCAGTTGGGACGTCTAGTAAACGAAAG 78 consensus_4478#1 TATAACTATAAAATATGAAATTCAACCAACACCAAGATCAGAATTTTCAATACAAAAGTC 240 * * * * * * * ** * consensus_4478#0 GAGGTTTATTTATTTTTATTGTGTTCTACATACTCTTTGTTTTGTTTTTGTTTTACGACA 299 consensus_4478#2 GAAAATTACT-ACATTAGAAGAAATATACATGTTCAGTCTCCCGATTAAGGAGTGTGAAA 137 consensus_4478#1 AAGACAGTTCTACTGTGTGGGACGGAGACGTGGAGAACTACGAAAACCATCGTCTAGATA 300 * * * * ** * ** * consensus_4478#0 AACAACACAAT-ACATGGAGCTAACTCTTTTCAATGTTACAAAATTATGAGTCTTAC-TT 357 consensus_4478#2 TTATAGATACC-ATATTGGGTTCAAG--TTTAAAAGATGAAGTACTTAAAATCATGC-CA 193 consensus_4478#1 ATGCAAGTGTTTATTAACAGTTGTCTAGGTAAGATACTTCGGATCCGTTTGCCAGACACT 360 * * * * * * * * * consensus_4478#0 ACTTACATCAACATTCTCTATCCAACCCTGTCCTGGACAGTCCTTTTCAGT--TCTTTCC 415 consensus_4478#2 GTTCAAA--AGCAGACTTGGTGCTGGCCAG----AGAACCCGCTTTAAAGCAATTGTTGC 247 consensus_4478#1 ATCATCGACAAGTTACTGTGAGAGACAACAAACCAGATTCCATTTAATGGAGGAAGAAAT 420 * ** ** ** * consensus_4478#0 AATTAACATTCATTNTTTTCATATCTGTTTCTATCTCCCGACATAA 461 consensus_4478#2 AATGGGAGACC----------------------------------- 258 consensus_4478#1 CATGAAGAAGCACTGGAAGTG------------------------- 441 ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||