These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence [GTAAGAAGCAGAGCAAATTTCTTTTTCTAGAAAAAGACAATAAATAAATAATCCAAATGTTTTACAAGAA-AACAAAACAGAACACATAAATAATGTAGAAAAATAAATGATGCATTGGATACTACTAGATGTTGCTTTAGAAGTACAGCTGATATAATCATTAAAACGTAGTTTCTTAAATACACAAAAGTTGGTTTAAAAGTAACGTTTTTTTGCTACAAAAAAATACAGAAGTCGAAATACGACAAGTTATGAAAGACATGGGCAAATGAAAAAAAATAAGTTAAGGCGTGGCAAATAACATCCTCTTCGACTAACACGCACAGGCGCTGACATCAACACACGAAGTACATCGTTCAACTTACCGCATAAAAACAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGCTGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGAAGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTGTGTAAATTGTAAAACTAAAAAAAGAATATTATAAATTTGATAACAACCTCAAAATTATTACATTTCATGATATTTATATAGTTTGACAAGAGAAGTATTATTCCAA] [+] EMBL CD075650 [GTAAGAAGCAGAGCAAATTTCTTTTTCTAGAAAAAGACAATAAATAAATAATCCAAATGTTTTACAAGAA AACAAAACAGAACACATAAATAATGTAGAAAAATAAATGATGCATTGGATACTACTAGATGTTGCTTTAGAAGTACAGCTGATATAATCATTAAAACGTAGTTTCTTAAATACACAAAAGTTGGTTTAAAAGTAACGTTTTTTTGCTACAAAAAAATACAGAAGTCGAAATACGACAAGTTATGAAAGACATGGGCAAATGAAAAAAAATAAGTTAAGGCGTGGCAAATAACATCCTCTTCGACTAACACGCACAGGCGCTGACATCAACACACGAAGTACATCGTTCAACTTACCGCATAAAAACAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGCTGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGAAGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTGTGTAAATTGTAAAACTAAAAAAAGAATATTATAAATTTGATAACAACCTCAAAATTATTACATTTCATGATATTTATATAGTTTGACAAGAGAAGTATTATTCCAA] [+] EMBL AA999476 [ CCAAATGTTTTACAAGAANAACAAAACAGAACACATAAATAATGTAGAAAAATAAATGATGCATTGGATACTACTAGATGTTGCTTTAGAAGTACAGCTGATATAATCATTAAAACGTAGTTTCTTAAATACACAAAAGTTGGTTTAAAAGTAACGTTTTTTTGCTACAAAAAAATACAGAAGTCGAAATACGACAAGTTATGAAAGACATGGGCAAATGAAAAAAAATAAGTTAAGGCGTGGCAAATAACATCCTCTTCGACTAACACGCACAGGCGCTGACATCAACACACGGAGTACATCGGTCAACTTACCGGATAAAAACCGTAATTATGACAGAA ] consensusID : consensus_4487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [TAAAACAAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGCTGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGAAGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTGTGTAAATTGCTCGTGACGAATTC] [-] EMBL CD077639 [TAAAACAAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGCTGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGAAGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTGTGTAAATTGCTCGTGACGAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4487#0 GTAAGAAGCAGAGCAAATTTCTTTTTCTAGAAAAAGACAATAAATAAATAATCCAAATGT 60 consensus_4487#1 ------------------------------------------------------------ consensus_4487#0 TTTACAAGAAAACAAAACAGAACACATAAATAATGTAGAAAAATAAATGATGCATTGGAT 120 consensus_4487#1 ------------------------------------------------------------ consensus_4487#0 ACTACTAGATGTTGCTTTAGAAGTACAGCTGATATAATCATTAAAACGTAGTTTCTTAAA 180 consensus_4487#1 ------------------------------------------------------------ consensus_4487#0 TACACAAAAGTTGGTTTAAAAGTAACGTTTTTTTGCTACAAAAAAATACAGAAGTCGAAA 240 consensus_4487#1 ------------------------------------------------------------ consensus_4487#0 TACGACAAGTTATGAAAGACATGGGCAAATGAAAAAAAATAAGTTAAGGCGTGGCAAATA 300 consensus_4487#1 ------------------------------------------------------------ consensus_4487#0 ACATCCTCTTCGACTAACACGCACAGGCGCTGACATCAACACACGAAGTACATCGTTCAA 360 consensus_4487#1 ------------------------------------------------------------ consensus_4487#0 CTTACCGCATAAAAACAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGC 420 consensus_4487#1 ---------TAAAACAAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGC 51 ***** ******************************************** consensus_4487#0 TGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGA 480 consensus_4487#1 TGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGA 111 ************************************************************ consensus_4487#0 AGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTG 540 consensus_4487#1 AGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTG 171 ************************************************************ consensus_4487#0 TGTAAATTGTAAAACTAAAAAAAGAATATTATAAATTTGATAACAACCTCAAAATTATTA 600 consensus_4487#1 TGTAAATTGCTCG--TGACGAATTC----------------------------------- 194 ********* * * ** consensus_4487#0 CATTTCATGATATTTATATAGTTTGACAAGAGAAGTATTATTCCAA 646 consensus_4487#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||