These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGGTTTTCTTTCCATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGCTAAATCCACACATACCAACGTGTTCACAACATAGAAGTAAATACAAAAAATATAAAAAAATTAGAAACATATATTAAATAAATTAACCTTAAAAACAATATATTTAAACTCAATTTAAAAGAAATCTCAACCCTTAATATCATAAAATACAACAATAGAGCCAAAAATAATATTCAAAAATTCACATCTGTTATTTTTAACAAACCA] [+] EMBL CD093052 [CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGGTTTTCTTTCCATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGCTAAATCCACACATACCAACGTGTTCACAACATAGAAGTAAATACAAAAAATATAAAAAAATTAGAAACATATATTAAATAAATTAACCTTAAAAACAATATATTTAAACTCAATTTAAAAGAAATCTCAACCCTTAATATCATAAAATACAACAATAGAGCCAAAAATAATATTCAAAAATTCACATCTGTTATTTTTAACAAACCA] consensusID : consensus_4503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 211 fasta sequence [CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGG-TTTTCTTTCCATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGCTAAATCCACACATACCAACGTGTTCACAACATACAAGTAAATACAACAAATATACAAAAAATAGTTTCATTCTGCTCTGAAAACATTAACT] [+] EMBL CD093051 [CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGG TTTTCTTTCCATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGCTAAATCCACACATACCAACGTGTTCACAACATACAAGTAAATACAACAAATATACAAAAAATAGTTTCATTCTGCTCTGAAAACATTAACT] [+] EMBL CD093064 [CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGGCCTCTCTTTCCATGGATACTTATTTATTATTGCTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGCTAAATCCACACATACCAACGTGTTCACAACATACA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4503#0 CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGGTTTTCTTTC 60 consensus_4503#1 CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGGTTTTCTTTC 60 ************************************************************ consensus_4503#0 CATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGC 120 consensus_4503#1 CATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGC 120 ************************************************************ consensus_4503#0 TAAATCCACACATACCAACGTGTTCACAACATAGAAGTAAATACAAAAAATATAAAAAAA 180 consensus_4503#1 TAAATCCACACATACCAACGTGTTCACAACATACAAGTAAATACAACAAATATACAAAAA 180 ********************************* ************ ******* ***** consensus_4503#0 TTAGAAACAT---ATATTAAATAAATTAACCTTAAAAACAATATATTTAAACTCAATTTA 237 consensus_4503#1 ATAGTTTCATTCTGCTCTGAAAACATTAACT----------------------------- 211 *** *** * ** * ****** consensus_4503#0 AAAGAAATCTCAACCCTTAATATCATAAAATACAACAATAGAGCCAAAAATAATATTCAA 297 consensus_4503#1 ------------------------------------------------------------ consensus_4503#0 AAATTCACATCTGTTATTTTTAACAAACCA 327 consensus_4503#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||