These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4613#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [CGCAAATTTTGGTGATATACACTGAATTGATAAAATAGCGATTATTAGTAGTTAATTAGTCTTCAGAATAGCTTGACCATCCATTCATCCAAATGATGTTGCTTAATTGTTGTATTGCTAAAAAATCTAATCTCTTCAAAAATGTTATTTATACTAAACGTTATGCAATGTCTGCTGACATAAAAACTGTTCTGGCGTCCAAACATTACGGGTTTATGGGATCTGGTAATATGTCTCAAGCATTGGTCAAAGGTTTTCTAGCCTCAAATGTAATGAATGGTTCTCAAGTTACAATGACTGATCGGTATGGTTTATCATTTCCAGATGCAGAGTTTCTGATACCGCTGAAAGCTTTATGTTCTAAATATGGAGTGGAATATATACAAACAAATGAACCAATGGTTGAAAAAAGTGATGTCGTGTTCGCCTGCGTTAAACCGGACATA] [+] EMBL CD131803 [CGCAAATTTTGGTGATATACACTGAATTGATAAAATAGCGATTATTAGTAGTTAATTAGTCTTCAGAATAGCTTGACCATCCATTCATCCAAATGATGTTGCTTAATTGTTGTATTGCTAAAAAATCTAATCTCTTCAAAAATGTTATTTATACTAAACGTTATGCAATGTCTGCTGACATAAAAACTGTTCTGGCGTCCAAACATTACGGGTTTATGGGATCTGGTAATATGTCTCAAGCATTGGTCAAAGGTTTTCTAGCCTCAAATGTAATGAATGGTTCTCAAGTTACAATGACTGATCGGTATGGTTTATCATTTCCAGATGCAGAGTTTCTGATACCGCTGAAAGCTTTATGTTCTAAATATGGAGTGGAATATATACAAACAAATGAACCAATGGTTGAAAAAAGTGATGTCGTGTTCGCCTGCGTTAAACCGGACATA] consensusID : consensus_4613#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 406 fasta sequence [TCTAGCCTCAAATGTAATGAATGGTTCTCAAGTTACAATGACTGATCGGTATGGTTTATCATTTCCAGATGCAGAGAAATATGGAGTGGAATATATACAAACAAATGAACCAATGGTTGAAAAAAGTGATGTCGTGTTCGCCTGCGTTAAACCGCACATATTACTGCCGGCTCTAAAATGTTTATCCGATCGTTTAAATGATAAACTTTTGGTTTCTATTGCTGCAGGGATTACACTAGACCAAATACAGCAGGTTGTGCCGAAATCTACAAGAATTATCCGTATGATGCCTAATACACCGTGTTTGGTCGGTGTTGGTACTGCAGTGTATGCGCA-ACATCTTCTGTTACTGAACAAGATATTAATTTGATTTCTGCATTGTGTTCATCAATCTTTCCTGTATTTG] [-] EMBL CD132091 [TCTAGCCTCAAATGTAATGAATGGTTCTCAAGTTACAATGACTGATCGGTATGGTTTATCATTTCCAGATGCAGAGAAATATGGAGTGGAATATATACAAACAAATGAACCAATGGTTGAAAAAAGTGATGTCGTGTTCGCCTGCGTTAAACCGCACATATTACTGCCGGCTCTAAAATGTTTATCCGATCGTTTAAATGATAAACTTTTGGTTTCTATTGCTGCAGGGATTACACTAGACCAAATACAGCAGGTTGTGCCGAAATCTACAAGAATTATCCGTATGATGCCTAATACACCGTGTTTGGTCGGTGTTGGTACTGCAGTGTATGCGCA ACATCTTCTGTTACTGAACAAGATATTAATTTGATTTCTGCATTGTGTTCATCAATCTTTCCTGTATTTG] [+] EMBL CD185739 [ GATGTCGTGTTCGCCTGCGTTAAACCGCACATATTACTGCCGGCTCTAAAATGTTTATCCGATCGTTTAAATGATAAACTTTTGGTTTCTATTGCTGCAGGGATTACACTAGACCAAATACAGCAGGTTGTGCCGAAATCTACAAGAATTATCCGTATGATGCCTAATACACCGTGTTTGGTCGGTGTTGGTACTGCAGTGTATGCGCATACATCTTCTGTTACTGAACAAGATATTAATTTGATTTCTGCATTGTGTTCATCAATCTTTCCTGTAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4613#0 CGCAAATTTTGGTGATATACACTGAATTGATAAAATAGCGATTATTAGTAGTTAATTAGT 60 consensus_4613#1 ---------------TCTAGCCTCAAATGT--AATGAATGGTTCTCAAGTTACAATGACT 43 * ** ** ** ** ** * * ** * * *** * * consensus_4613#0 CTTCAGAATAGCTTGACCATCCATTCATCCAAATGA-TGTTGCTTAATTGTTGTATTGCT 119 consensus_4613#1 GATCGGTATGGTTT-ATCATTTCCAGATGCAGAGAAATATGGAGTGGAATATATACAAAC 102 ** * ** * ** * *** ** ** * * * * * * * ** consensus_4613#0 AAAAAATCTAATCTCTTCAAAAATGTTAT-TTATACTAAACGTTATGCAATGTCTGCTGA 178 consensus_4613#1 AAATGAACCAATGG-TTGAAAAAAGTGATGTCGTGTTCGCCTGCGTTAAA---CCGCACA 158 *** * * *** ** ***** ** ** * * * * * ** * ** * consensus_4613#0 CATAAAAACTG-TTCTGGCGTCCAAACATTACGGGTTTATGGGATCTGGTAATATGTCTC 237 consensus_4613#1 TATTACTGCCGGCTCTAAAATGTTTATCCGATCG-TTTAAATGATAAACTTTTG-GTTTC 216 ** * * * *** * * * * **** *** * * ** ** consensus_4613#0 AAGCATTGGTCAAAGGTTTTCTAGCCTCAAATGTAATGAATGGTTCTCAAGTTACAATGA 297 consensus_4613#1 TATTGCTG--CAGGGATTACACTAGACCAAATACAGCAGGTTGTGCCGAAATCTACAAGA 274 * ** ** * ** ***** * * ** * ** * * ** consensus_4613#0 CTGATCGGTATGGTTTATCATTTCCAGATGCAGAGTTTCTGATACCGCTGAAAGCTTTAT 357 consensus_4613#1 ATTATCCGTATGATGCCTAATACACCG-TGTTTGGTCGGTGTTGGTACTGCAG----TGT 329 * *** ***** * * ** * * ** ** ** * *** * * * consensus_4613#0 GTTCTAAATATGGAGTGGAATATATACAAACAAATGAACCAATGGTTGAAAAAAGTGATG 417 consensus_4613#1 ATGCGCAACATCTTCTGTTAC-TGAACAAGATATTAATTTGATTTCTGCATTGTGTT-CA 387 * * ** ** ** * * **** * * * ** ** * ** consensus_4613#0 TCGTGTTCGCCTGCGTTAAACCGGACATA 446 consensus_4613#1 TCAATCTTTCCTGTATTTG---------- 406 ** * **** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||