These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 896 fasta sequence [ATTATTNCGGCACGAGGCATAAAANAGAAAAATGAATTCAAGAGAATGGCAGAACAAGTATTTTCTTAGTCTGTCTTCGACGTCTCTTAGGTAATGAGTCGATACCAGGTGCTCAGAAAAACTCTAATGGAATGTGATGAAGCAGATCAATATTCTACCCCTGATATAATGCATTTATCCACCAAACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACATGAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGAAAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGAAATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTTAAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATATATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAACGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATCCAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTTTTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCAACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTCCAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATTGTCATTTGACATCGCTGTGATATTTGTATGCTCGTGNGATTATTATTATTATTATT] [+] EMBL CD081723 [ATTATTNCGGCACGAGGCATAAAANAGAAAAATGAATTCAAGAGAATGGCAGAACAAGTATTTTCTTAGTCTGTCTTCGACGTCTCTTAGGTAATGAGTCGATACCAGGTGCTCAGAAAAACTCTAATGGAATGTGATGAAGCAGATCAATATTCTACCCCTGATATAATGCATTTATCCACCAAACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACATGAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGAAAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGAAATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTTAAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATATATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAACGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATCCAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTTTTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCAACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTCCAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATTGTCATTTGACATCGCTGTGATATT ] [+] EMBL CD079429 [ ATAATGCATTTATCCACCAAACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACATGAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGAAAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGAAATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTTAAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATATATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAACGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATCCAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTTTTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCAACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTCCAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATTGTCATTTGACATCGCTGTGATATTTGTATGCTCGTGNGATTATTATTATTATTATT] consensusID : consensus_4626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [CGAGCCAANATTCGGCACGAGGACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACATGAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGAAAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGAAATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTTAAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATATATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAACGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATCCAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTTTTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCAACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTCCAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATTGTCATTTGACATCGCTGTGATA] [+] EMBL CD082598 [CGAGCCAANATTCGGCACGAGGACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACATGAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGAAAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGAAATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTTAAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATATATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAACGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATCCAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTTTTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCAACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTCCAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATTGTCATTTGACATCGCTGTGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4626#0 ATTATTNCGGCACGAGGCATAAAANAGAAAAATGAATTCAAGAGAATGGCAGAACAAGTA 60 consensus_4626#1 ------------------------------------------------------------ consensus_4626#0 TTTTCTTAGTCTGTCTTCGACGTCTCTTAGGTAATGAGTCGATACCAGGTGCTCAGAAAA 120 consensus_4626#1 ------------------------------------------------------------ consensus_4626#0 ACTCTAATGGAATGTGATGAAGCAGATCAATATTCTACCCCTGATATAATGCATTTATCC 180 consensus_4626#1 -----------------------------------------CGAGCCAA--NATTCGGCA 17 ** ** *** * consensus_4626#0 ACCAAACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACAT 240 consensus_4626#1 CGAGGACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACAT 77 ******************************************************* consensus_4626#0 GAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGA 300 consensus_4626#1 GAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGA 137 ************************************************************ consensus_4626#0 AAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGA 360 consensus_4626#1 AAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGA 197 ************************************************************ consensus_4626#0 AATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTT 420 consensus_4626#1 AATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTT 257 ************************************************************ consensus_4626#0 AAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATA 480 consensus_4626#1 AAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATA 317 ************************************************************ consensus_4626#0 TATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAA 540 consensus_4626#1 TATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAA 377 ************************************************************ consensus_4626#0 CGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATC 600 consensus_4626#1 CGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATC 437 ************************************************************ consensus_4626#0 CAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTT 660 consensus_4626#1 CAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTT 497 ************************************************************ consensus_4626#0 TTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCA 720 consensus_4626#1 TTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCA 557 ************************************************************ consensus_4626#0 ACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTC 780 consensus_4626#1 ACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTC 617 ************************************************************ consensus_4626#0 CAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATT 840 consensus_4626#1 CAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATT 677 ************************************************************ consensus_4626#0 GTCATTTGACATCGCTGTGATATTTGTATGCTCGTGNGATTATTATTATTATTATT 896 consensus_4626#1 GTCATTTGACATCGCTGTGATA---------------------------------- 699 ********************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||