These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_464#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [AAGTGATAGGCTGTTGAAGTCGGTATTCTGATTAGAGGATTCATCACGTGATAATTGACAGGAACATAAGTCCTAACAATATTCACTCCAGGACTCAAACTACGTAGGCAAACGATGTTTTCAATAACTTCAGAATCATCATCGTCTCCACAGTTATAAATTGACATGTGGTAGTGAAAGTAAAAGATGATCTGTCACTGAGCGTGAGAAAACAGGCACTTATCCTACTGACTAAAGGATATGTGATTTTTTTCCTCCCATTACTTTCTATCACGGACTCACCGAAACTGATTACTCGTTATAAGCAAAGATGGATAGTGGCTAGCAGTGGAATCCAGTTTGACGCGCGTTTCATCCTATCTGGGGCTCGTCAGCTGGGTGTACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCAGTACTTTTCGCTTCAAATGTCATCGCGTTATCCACTCAGCTACTGATTACTTGTTATTGTGTTG] [+] EMBL CD069561 [AAGTGATAGGCTGTTGAAGTCGGTATTCTGATTAGAGGATTCATCACGTGATAATTGACAGGAACATAAGTCCTAACAATATTCACTCCAGGACTCAAACTACGTAGGCAAACGATGTTTTCAATAACTTCAGAATCATCATCGTCTCCACAGTTATAAATTGACATGTGGTAGTGAAAGTAAAAGATGATCTGTCACTGAGCGTGAGAAAACAGGCACTTATCCTACTGACTAAAGGATATGTGATTTTTTTCCTCCCATTACTTTCTATCACGGACTCACCGAAACTGATTACTCGTTATAAGCAAAGATGGATAGTGGCTAGCAGTGGAATCCAGTTTGACGCGCGTTTCATCCTATCTGGGGCTCGTCAGCTGGGTGTACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCAGTACTTTTCGCTTCAAATGTCATCGCGTTATCCACTCAGCTACTGATTACTTGTTATTGTGTTG] consensusID : consensus_464#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 84 fasta sequence [GGACCTCCCATATTATAACCCATCGGTGGCATGCACCCAGGCCCAGATCCACCGTATCCAGGGCCACTGAATCCTCCCTGTCCA] [+] EMBL CD155885 [GGACCTCCCATATTATAACCCATCGGTGGCATGCACCCAGGCCCAGATCCACCGTATCCAGGGCCACTGAATCCTCCCTGTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_464#0 AAGTGATAGGCTGTTGAAGTCGGTATTCTGATTAGAGGATTCATCACGTGATAATTGACA 60 consensus_464#1 ------------------------------------------------------------ consensus_464#0 GGAACATAAGTCCTAACAATATTCACTCCAGGACTCAAACTACGTAGGCAAACGATGTTT 120 consensus_464#1 ------------------------------------------------------------ consensus_464#0 TCAATAACTTCAGAATCATCATCGTCTCCACAGTTATAAATTGACATGTGGTAGTGAAAG 180 consensus_464#1 ------------------------------------------------------------ consensus_464#0 TAAAAGATGATCTGTCACTGAGCGTGAGAAAACAGGCACTTATCCTACTGACTAAAGGAT 240 consensus_464#1 ------------------------------------------------------------ consensus_464#0 ATGTGATTTTTTTCCTCCCATTACTTTCTATCACGGACTCACCGAAACTGATTACTCGTT 300 consensus_464#1 ------------------------------------------------------------ consensus_464#0 ATAAGCAAAGATGGATAGTGGCTAGCAGTGGAATCCAGTTTGACGCGCGTTTCATCCTAT 360 consensus_464#1 --------------------------------------------GGACCTCCCATATTAT 16 * * * *** *** consensus_464#0 CTGGGGCTCGTCAGCTGGGTGTACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGA 420 consensus_464#1 ----AACCCATCGGTGGCATGCACCCA-GGCCCAGATCCACCGT--ATCCAGGGCCACTG 69 * * ** * * ** *** * **** ** * * *** * * consensus_464#0 ACCCAGTACTTTTCGCTTCAAATGTCATCGCGTTATCCACTCAGCTACTGATTACTTGTT 480 consensus_464#1 AATCCTCCCTGTCCA--------------------------------------------- 84 * * ** * * consensus_464#0 ATTGTGTTG 489 consensus_464#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||