These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [CAGAAAGTAGAGTTTCAGTTGGACTAACCAAGTCGGATTCCTTGAACTCACAACGATTATCAGGAGAGTTCAACGATATACCACCGACCTCCAAACGAGAACTAAAATGCCTTACAGGCGGAGGTAAATCAAATTTCAGACGCTTCTTGGGAGAATCAGGCTCACAAATCATGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCCATGCAC] [+] EMBL CD097302 [CAGAAAGTAGAGTTTCAGTTGGACTAACCAAGTCGGATTCCTTGAACTCACAACGATTATCAGGAGAGTTCAACGATATACCACCGACCTCCAAACGAGAACTAAAATGCCTTACAGGCGGAGGTAAATCAAATTTCAGACGCTTCTTGGGAGAATCAGGCTCACAAATCATGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCCATGCAC] consensusID : consensus_471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [CTGCAAATCCTCGTCGTAACCCGTCTGATAGTGCAACCGGTCACGTCGACAAGCCTTCTATGTGCATAGATCGATGTCTTGCACCCCGGTGACAGTGGATGCGACCACACTGTTTCGCATATGGCGAACNGTGAGGCCCCGTTTCGTACTCTACTCACTCTGTTCGNNACATGTCGGCACCCGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCATGCACAACTGTGTGCGAGATTCGGG] [-] EMBL CD061428 [CTGCAAATCCTCGTCGTAACCCGTCTGATAGTGCAACCGGTCACGTCGACAAGCCTTCTATGTGCATAGATCGATGTCTTGCACCCCGGTGACAGTGGATGCGACCACACTGTTTCGCATATGGCGAACNGTGAGGCCCCGTTTCGTACTCTACTCACTCTGTTCGNNACATGTCGGCACCCGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCATGCACAACTGTGTGCGAGATTCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_471#0 CAGAAAGTAGAGTTTCAGTTGGACTAACCAAGTCGGATTCCTTGAACTCACAACGATTAT 60 consensus_471#1 ------------------------------------------------------------ consensus_471#0 CAGGAGAGTTCAACGATATACCACCGACCTCCAAACGAGAACTAAAATGCCTTACAGGCG 120 consensus_471#1 ------------------------------------------------------------ consensus_471#0 GAGGTAAATCAAATTTCAGACGCTTCTTGGGAGAATCAGGCTCACAAATCATGTCATTGT 180 consensus_471#1 ------------------------------------------------------------ consensus_471#0 TCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTAT 240 consensus_471#1 ------------------------------------------------------------ consensus_471#0 CCAGTGCACGCTGCAAATCCTC-TCGTAACCCGTCTGAT-GTGCAAC-GGTCA-GTCGAC 296 consensus_471#1 ----------CTGCAAATCCTCGTCGTAACCCGTCTGATAGTGCAACCGGTCACGTCGAC 50 ************ **************** ******* ***** ****** consensus_471#0 AAGCCTTC-ATGTGCATAG-TCGATGTCTTGCACC--GGTGAC-GTGGAT-CGACCA-AC 349 consensus_471#1 AAGCCTTCTATGTGCATAGATCGATGTCTTGCACCCCGGTGACAGTGGATGCGACCACAC 110 ******** ********** *************** ****** ****** ****** ** consensus_471#0 TGTTTCGCATA-GGCGA--CGTGAGGCCCG--TTCGTACTC-ACTCACTCTGTTCGCCA- 402 consensus_471#1 TGTTTCGCATATGGCGAACNGTGAGGCCCCGTTTCGTACTCTACTCACTCTGTTCGNNAC 170 *********** ***** ********* ********* ************** * consensus_471#0 -TGTCGGCAC--GGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCT 459 consensus_471#1 ATGTCGGCACCCGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCT 230 ********* ************************************************ consensus_471#0 TCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCCATGCAC------------- 506 consensus_471#1 TCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTC-ATGCACAACTGTGTGCGAG 289 **************************************** ****** consensus_471#0 ------- consensus_471#1 ATTCGGG 296 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||