These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 300 fasta sequence [GCATTCTCTTCACCTAGTTCAAATTTAGACAACTGGGTACTATCATTAGCAGCATCTTCCACGGTGTGGGCAACCGGGAAGTGATAACTGCCCTCATACTTCTAACAGCACTCAAGACCACTGTATTCATAATCAATCTTCTTCTTCAATTACTACTATTCCTTCTACCTTGACTTTCAACACTAAACTTCCTCTTTCGGTTTCCTCCTCAAGTGTCACCATGGCCAACGATTTTAGTGAGCGAAAATCTGTCCCAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCAA] [+] EMBL CD092135 [GCATTCTCTTCACCTAGTTCAAATTTAGACAACTGGGTACTATCATTAGCAGCATCTTCCACGGTGTGGGCAACCGGGAAGTGATAACTGCCCTCATACTTCTAACAGCACTCAAGACCACTGTATTCATAATCAATCTTCTTCTTCAATTACTACTATTCCTTCTACCTTGACTTTCAACACTAAACTTCCTC ] [-] EMBL CD059767 [ TCATAATCAATCTCCTTCTTCAATTCCTACTATTCCTTCTACCTTGACTTTCAACACTAAACTTCCTCTTTCGGTTTCCTCCTCAAGTGTCACCATGGCCAACGATTTTAGTGAGCGAAAATCTGTCCCAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCAA] consensusID : consensus_4710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence [GCACTGACTCAACACTAAACTTCCTCCTCCGGCTTCCTCCTCAAGTGTCACCATAGCCAACAATTCTAGTGCGCGAAACGCTGTCCTAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCGACGTACGTACCCTAAGTCAAATCGGTCAGTGCA] [-] EMBL CD086541 [GCACTGACTCAACACTAAACTTCCTCCTCCGGCTTCCTCCTCAAGTGTCACCATAGCCAACAATTCTAGTGCGCGAAACGCTGTCCTAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCGACGTACGTACCCTAAGTCAAATCGGTCAGTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4710#0 GCATTCTCTTCACCTAGTTCAAATTTAGACAACTGGGTACTATCATTAGCAGCATCTTCC 60 consensus_4710#1 ------------------------------------------------------------ consensus_4710#0 ACGGTGTGGGCAACCGGGAAGTGATAACTGCCCTCATACTTCTAACAGCACTCAAGACCA 120 consensus_4710#1 ------------------------------------------------------------ consensus_4710#0 CTGTATTCATAATCAATCTTCTTCTTCAATTACTACTATTCCTTCTACCTTGACTTTCAA 180 consensus_4710#1 ----------------------------------------------GCACTGACT--CAA 12 * ***** *** consensus_4710#0 CACTAAACTTCCTCTTTCGGTTTCCTCCTCAAGTGTCACCATGGCCAACGATTTTAGTGA 240 consensus_4710#1 CACTAAACTTCCTCCTCCGGCTTCCTCCTCAAGTGTCACCATAGCCAACAATTCTAGTGC 72 ************** * *** ********************* ****** *** ***** consensus_4710#0 GCGAAAATCTGTCCCAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCAA 300 consensus_4710#1 GCGAAACGCTGTCCTAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCGA 132 ****** ****** ******************************************* * consensus_4710#0 -------------------------------- consensus_4710#1 CGTACGTACCCTAAGTCAAATCGGTCAGTGCA 164 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||