These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 456 fasta sequence [AACAACAATAATTATAACAATTACAAAACAAACCTTCAATTTTGTAGGTTCCCGGAGAAAAAACTCCCAAATACCAAACCAATGACAAAAGAAACCAAAATGTCCGAAAAGAATGATATAAACAAACAAGTCCAAAGGTTGAGTAAGACAAACACATCCAAAAACACAGTAAAATTGATGTACAGTAAAAAGGTTTTAATCGGCCAAATGTCTTCAGTTGATCCGTAACACTCCCGACCATAAGAACCTTGATTCTTTTCACAGACAAGTAAATAGGTAGCAGGAACCCAAGTATATACATCACAAACAACCAANAACAAGCATTCAACACACCAACAACCTCGTGATCCCTAGGACTTACACCAGTACGCCTAGGAATCCGAGTAGCTAGCTACCACCTATAGCTTCAAGAAGACACAGTTTTCTAATATCTCTCACTAGGATCCCCTTTCTTGT] [+] EMBL CD143224 [AACAACAATAATTATAACAATTACAAAACAAACCTTCAATTTTGTAGGTTCCCGGAGAAAAAACTCCCAAATACCAAACCAATGACAAAAGAAACCAAAATGTCCGAAAAGAATGATATAAACAAACAAGTCCAAAGGTTGAGTAAGACAAACACATCCAAAAACACAGTAAAATTGATGTACAGTAAAAAGGTTTTAATCGGCCAAATGTCTTCAGTTGATCCGTAACACTCCCGACCATAAGAACCTTGATTCTTTTCACAGACAAGTAAATAGGTAGCAGGAACCCAAGTATATACATCACAAACAACCAANAACAAGCATTCAACACACCAACAACCTCGTGATCCCTAGGACTTACACCAGTACGCCTAGGAATCCGAGTAGCTAGC ] [+] EMBL CD127731 [ AAAATCTCCCAAATACCAAACCAATGACAAAAGAAACCAAAATGTCCGAAAAGAATGATATAAACAAACAAGTCCAAAGGTTAAGTAAAACAAACACATCCAAAAACACAGT AAATTGCTGTGCAGTAAAAAGGTTTTAATCGGCCAAATGTCTTCAGTTCTCCCGTAACACTCCCGACCAAAAGAACCTTGGTTCTTTTCACAGACGAGTAAATAGGTAGCA GAAGCGAAGTATATACATCACAAACAACCAACAACAAGCATTCAACACACTAACAACCTCGTGATCCCTAGGACTTACACCAGTACGCCTAGGGATCCGAGTAGCTACCTACCACCTATAGCTTCAAGAAGACACAGTTTTCTAATATCTCTCACTAGGATCCCCTTTCTTGT] consensusID : consensus_4713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [TTTTTTTTTTTTTTTTTTTACGTTCGCCATTTATATTTGATCACAAGCAAACTTTTACACATTGATAGCAAAACCAAACCTAAAATAAATGTTTATAGTTCATCCACAGACACACGAATATCGTCAATCTTTAATATCATTTTACAAAGTTGAACAGCTAGCATGATTTGAGCGCGCTTGGAACTTAGTGTTTCAAGGACGTTTTGATGATACATATCATTAGTACCAACATTCAGACAGTCTACTCCAAGACGAGGATTATGTTCGCATAATTGCCGTGCTTTCAGTTCAGAGACTGTAACAATTGGTGGCAAACCTGAATTCTCAGCTAAAGCCATTGGAATCGCCTCTAAAGCATCAGCAAACGCTCGCATAGCATACGGCTCAAGACCTTCAATCTTGGCAGCTTTAAG] [+] EMBL AI395319 [TTTTTTTTTTTTTTTTTTTACGTTCGCCATTTATATTTGATCACAAGCAAACTTTTACACATTGATAGCAAAACCAAACCTAAAATAAATGTTTATAGTTCATCCACAGACACACGAATATCGTCAATCTTTAATATCATTTTACAAAGTTGAACAGCTAGCATGATTTGAGCGCGCTTGGAACTTAGTGTTTCAAGGACGTTTTGATGATACATATCATTAGTACCAACATTCAGACAGTCTACTCCAAGACGAGGATTATGTTCGCATAATTGCCGTGCTTTCAGTTCAGAGACTGTAACAATTGGTGGCAAACCTGAATTCTCAGCTAAAGCCATTGGAATCGCCTCTAAAGCATCAGCAAACGCTCGCATAGCATACGGCTCAAGACCTTCAATCTTGGCAGCTTTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4713#0 AACAACAATAATTATAACAATTACAAAACAAACCTTCAATTTTGTAGGTTCCCGGAGAAA 60 consensus_4713#1 --------TTTTTTTTTTTTTTTTTTTACGT-TCGCCATTTATATTTGATCACA---AGC 48 * ** * ** ** * ** ** * * * ** * * consensus_4713#0 AAACTCCCAAATACCAA-ACCAATGACAAAAGAAACCAAAATGTCCGAAAAGAATG---A 116 consensus_4713#1 AAACTTTTACACATTGATAGCAAAACCAAACCTAAAATAAATGTTTATAGTTCATCCACA 108 ***** * * * * * *** **** ** ****** * ** * consensus_4713#0 TATAAACAAACAAGTCCAAAGGTTGAGTAAGACAAACACATCCAAAAACACAGTAAAATT 176 consensus_4713#1 GACACACGAATATCGTCAATCTTTAATATCATTTTACAAAGTTGAACAGCTAGCATGATT 168 * * ** ** * *** ** * *** * ** * ** * *** consensus_4713#0 GATGTACAGTAAAAAGGTTTTAATCGGCCAAATGTCTTCAGTTGATCCGTAACACTCCCG 236 consensus_4713#1 TGAGCGCGCTTGGAA---CTTAGTGTTTCAAGGACGTTTTGATGATACATATCATTAGTA 225 * * * ** *** * *** ** * **** * ** ** * consensus_4713#0 ACCATAAGAACCTTGATTCTTTTCACAGACAAGTAAATAGGTAGCAGGAAC-CCAAGTAT 295 consensus_4713#1 CCAACATTCAGAC--AGTCTACTCCAAGACGAGGATTATGTTCGCATAATTGCCGTGCTT 283 * * * * * *** ** **** ** * * * *** * ** * * consensus_4713#0 ATACATCACAAACAACCAANAACAAGCATTCAACACACCAACAACCTCGTGATCCCTAGG 355 consensus_4713#1 TCAGTTCAGAGACTGT-AACAATTGGTGGCAAACCTGAATTCTCAGCTAAAGCCATTGGA 342 * *** * ** ** ** * *** * * * * consensus_4713#0 ACTTACACCAGTACGCCTAGGAATCCGAGTAGCTAGC-TACCACCTATAGCTTCAAGAAG 414 consensus_4713#1 ATCGCCTCTAAAGCATCAGCAAACGCTCGCA--TAGCATACGGCTCAAGACCTTCAATCT 400 * * * * * * ** * * * **** *** * * * * * consensus_4713#0 ACACAGTTTTCTAATATCTCTCACTAGGATCCCCTTTCTTGT 456 consensus_4713#1 TGGCAGCTTTAAG----------------------------- 413 *** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||