These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4738#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence [TTTACTTCATTCTTTGTCCAATGCCCGACCATTATCATTACTATGACTATTACTATCACTACTACTACTACTACCACCACCGCTACTACCACTACTATCACCACCACCACTACCACCACCGCTACTACCACCACTACTACTACTATGATTATTATTATTATCATCTGTTTTCATGACTAGAGAAATAATAGTATTAGTATTAGTAATAACAATTAAAAGCAAAACCAATAGTCTTTCATGGATTGATTAAAAAAAGAGATAGAGAAAGAACAACTTTACCTCTTTTAATTGGTAACTATTCAATTTACCTCCCTTTGTATCTCTCTTTGCCCCTATCTCACTTTATTAAAGATAAGAATTGTAGACTCTTTATTCTCTTGATGATTCTTTTTTGGTAATGATTGATGTATTTTTTGAGATTTCTATGTATTATTGAATTGATTATAAAAAGTATTTTTTTGGATATTACTATGGGTTGACATCTTGGTACAGATAGATAGATAGATAGATCTGTATATGGAGTATTCTTCATTATTGACAAACCCTTTTCCTTTGATGATAATCCTAGTTCTTCTTCGTCTTCTTCTTCTTTGGTTATTTCTGAACGTATCTACTATTGATAAACCTTTTTCTTTGATGATAATCCCAGTTCTTCTTCACCAACTTC] [-] EMBL CD140520 [TTTACTTCATTCTTTGTCCAATGCCCGACCATTATCATTACTATGACTATTACTATCACTACTACTACTACTACCACCACCGCTACTACCACTACTATCACCACCACCACTACCACCACCGCTACTACCACCACTACTACTACTATGATTATTATTATTATCATCTGTTTTCATGACTAGAGAAATAATAGTATTAGTATTAGTAATAACAATTAAAAGCAAAACCAATAGTCTTTCATGGATTGATTAAAAAAAGAGATAGAGAAAGAACAACTTTACCTCTTTTAATTGGTAACTATTCAATTTACCTCCCTTTGTATCTCTCTTTGCCCCTATCTCACTTTATTAAAGATAAGAATTGTAGA ] [+] EMBL CD069026 [ CCACTACTACTACTATGATTATTATTATTATCATCTGTTTTCATGACTAGAGAAATAATAGTATTAGTATTAGTAATAACAATTAAAAGCAAAACCAATAGTCTTTCATGGATTGATTAAAAAAAGAGAAAAAGAAGGAACAACTTTACCTCTTTTAATTGGTAACTATTCAATTTACCTCCCTTTGTATCTCTCTTTGCCCCTATCTCACTTTATTAAAGATAAGAATTGTAGACTCTTTATTCTCTTGATGATTCTTTTTTGGTAATGATTGATGTATTTTTTGAGATTTCTATGTATTATTGAATTGATTATAAAAAGTATTTTTTTGGATATTACTATGGGTTGACATCTTGGTACAGATAGATAGATAGATAGATCTGTATATGGAGTATTCTTCATTATTGACAAACCCTTTTCCTTTGATGATAATCCTAGTTCTTCTTCGTCTTCTTCTTCTTTGGTTATTTCTGAACGTATCTACTATTGATAAACCTTTTTCTTTGATGATAATCCCAGTTCTTCTTCACCAACTTC] consensusID : consensus_4738#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [GCCACATAAACATATATTTCTTACAAATTTCATAATACAATATAAACAAAATTGTATCATTTTTAAAATAGACATACATATGTATAGATAGATAGATACGTTCAAAAATAAGCCCAGAAGAAGAAGACGAGGAAGAACTGGGATTATCATCAAAGGAAAAAGGTTTATCAATAGTAGATACGTTCAAAAAGAAGCAAAAAAAAAGTTGGTGAAAAAGAACTGGGATTA] [+] EMBL AI976949 [GCCACATAAACATATATTTCTTACAAATTTCATAATACAATATAAACAAAATTGTATCATTTTTAAAATAGACATACATATGTATAGATAGATAGATACGTTCAAAAATAAGCCCAGAAGAAGAAGACGAGGAAGAACTGGGATTATCATCAAAGGAAAAAGGTTTATCAATAGTAGATACGTTCAAAAAGAAGCAAAAAAAAAGTTGGTGAAAAAGAACTGGGATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4738#0 TTTACTTCATTCTTTGTCCAATGCCCGACCATTATCATTACTATGACTATTACTATCACT 60 consensus_4738#1 ------------------------------------------------------------ consensus_4738#0 ACTACTACTACTACCACCACCGCTACTACCACTACTATCACCACCACCACTACCACCACC 120 consensus_4738#1 ------------------------------------------------------------ consensus_4738#0 GCTACTACCACCACTACTACTACTATGATTATTATTATTATCATCTGTTTTCATGACTAG 180 consensus_4738#1 ------------------------------------------------------------ consensus_4738#0 AGAAATAATAGTATTAGTATTAGTAATAACAATTAAAAGCAAAACCAATAGTCTTTCATG 240 consensus_4738#1 ------------------------------------------------------------ consensus_4738#0 GATTGATTAAAAAAAGAGATAGAGAAAGAACAACTTTACCTCTTTTAATTGGTAACTATT 300 consensus_4738#1 ------------------------------------------------------------ consensus_4738#0 CAATTTACCTCCCTTTGTATCTCTCTTTGCCCCTATCTCACTTTATTAAAGATAAGAATT 360 consensus_4738#1 ---GCCACATAAACATATATTTCT---TACAAATTTCATAATACAATATAAACAA-AATT 53 ** * * *** *** * * * ** * * * ** * * ** **** consensus_4738#0 GTAGACTCTTTATTCTCTTGATGATTCTTTTTTGGTAATGATTGATGTATTTTTTGAGAT 420 consensus_4738#1 GTA------TCATTTTTAAAATAGACATACATATGTATAGATAGATAGAT------ACGT 101 *** * *** * ** * * *** *** *** ** * * consensus_4738#0 TTCTATGTATTATTGAATTGATTATAAAAAGTATTTTTTTGGATATTACTATGGGTTGAC 480 consensus_4738#1 TCAAAAATAAGCCCAGAAGAAGAAGACGAGGAAGAACTGGGATTATCATCAAAGGAAAAA 161 * * ** * * * * * * * * * *** * * ** * consensus_4738#0 ATCTTGGTACAGATAGATAGATAGATAGATCTGTATATGGAGTATTCTTCATTATTGACA 540 consensus_4738#1 GGTTTATCAATAGTAGATACGTTCAAAAAGAAGCAAAAAAAAAGTTGGTGAAAAAGAACT 221 ** * ****** * * * * * * * * ** * * * ** consensus_4738#0 AACCCTTTTCCTTTGATGATAATCCTAGTTCTTCTTCGTCTTCTTCTTCTTTGGTTATTT 600 consensus_4738#1 GGGATTA----------------------------------------------------- 228 * consensus_4738#0 CTGAACGTATCTACTATTGATAAACCTTTTTCTTTGATGATAATCCCAGTTCTTCTTCAC 660 consensus_4738#1 ------------------------------------------------------------ consensus_4738#0 CAACTTC 667 consensus_4738#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||