These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4744#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 343 fasta sequence [AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACGGGACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGACCTATTCACGATGATCGTAAGTTCA-TATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGACCTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGATCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAGTGGTAGTATCTGCTTAGATATCCTCCGGGGTCAGTGGTC] [+] EMBL CD092723 [AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACGGGACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGACCTATTCACGATGATCGTAAGTTCA TATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGACCTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGATCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAGTGGTAGTATCTGCTTAGATATCCTCCGGGGTCAGTGGTC] [-] EMBL BG931905 [ TCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACAGGACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGTCCCTGTGAAGATGATCGTAAG TCAGTGTGCGTTT TCTCAGTTTACATATAGTATTTGTCTGGCAAGCCACTATTATGGGACCTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGGTCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAATGGTAGTATCTGCTTAGATATCCTTCGGGGTCAGTGac ] consensusID : consensus_4744#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [AGAGTTACAGGACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGTCCCTGTGAAGATGATCGTAAGTCAGTGTGCGTTTTCTCAGTTTACATATAGTATTTGTCTGGCAAGCCACTATTATGGGACCTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGGTCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAATGGTAGTATCTGCTTAGATATCCTCCG] [-] EMBL CD092786 [AGAGTTACAGGACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGTCCCTGTGAAGATGATCGTAAGTCAGTGTGCGTTTTCTCAGTTTACATATAGTATTTGTCTGGCAAGCCACTATTATGGGACCTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGGTCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAATGGTAGTATCTGCTTAGATATCCTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4744#0 AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACGGG 60 consensus_4744#1 -------------------------------------------------AGAGTTACAGG 11 ******* ** consensus_4744#0 ACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGACCTATTCACGATGATCGTAAGT 120 consensus_4744#1 ACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGTCCCTGTGAAGATGATCGTAAGT 71 ************************************* ** * * ************* consensus_4744#0 TCATATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGAC 180 consensus_4744#1 CAGTGTGCGTTT-TCTCAGTTTACATATAGTATTTGTCTGGCAAGCCACTATTATGGGAC 130 * * **** ** ******** ********* *********************** consensus_4744#0 CTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATT 240 consensus_4744#1 CTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATT 190 ************************************************************ consensus_4744#0 ATCCTTTCAAACCCCCTAAGATCAGTTTCATGACGAAGATATATCATCCGAATATAAATC 300 consensus_4744#1 ATCCTTTCAAACCCCCTAAGGTCAGTTTCATGACGAAGATATATCATCCGAATATAAATC 250 ******************** *************************************** consensus_4744#0 CCAGTGGTAGTATCTGCTTAGATATCCTCCGGGGTCAGTGGTC 343 consensus_4744#1 CCAATGGTAGTATCTGCTTAGATATCCTCCG------------ 281 *** *************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||