These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4804#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 517 fasta sequence [CCCAGACTCTCAGTCTGTATGTGTCTGTGATGAGTGATAAATTGTTTGCATCGTGGGTACTGTTACAACTGGTATTGATTCGTATGTTTGCGCGGCTGCCTCTCGAATCGACTGGGAAACAGTTACTTGTAACTTTTTATTTATTAATTGTGTAGTCGTTGGTGTGTGCTGAACGCTTCCTTCTTTCGTTGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACACTTGTATTTCAACATTTCTACATTCAACTTGTGTAACGACTTGAACACCTTGAGAGAAACAGGGATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAAGAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACGTGGTTTTTGGTAGTACAGTAGGGACTCGAGCCATCGG] [-] EMBL CD068127 [CCCAGACTCTCAGTCTGTATGTGTCTGTGATGAGTGATAAATTGTTTGCATCGTGGGTACTGTTACAACTGGTATTGATTCGTATGTTTGCGCGGCTGCCTCTCGAATCGACTGGGAAACAGTTACTTGTAACTTTTTATTTATTAATTGTGTAGTCGTTGGTGTGTGCTGAACGCTTCCTTCTTTCGTTGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACACTTGTATTTCAACATTTCTACATTCAACTTGTGTAACGACT ] [+] EMBL CD126142 [ gctgCTCCAATCGACTGGGAAACAGTTAC TGTAACTTTTTATTTATTAATTGTGTAGTCG TGGTGTGTGCTGAACGCTTCCTTCTTTCG TGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACA TTGTATTTCAACATTTCTACATTCAACTTGTGTACCAGCTTGAACACCTTGAGAGAAACAGGGATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAAGAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACGTGGTTTTTGGTAGTACAGTAGGGACTCGAGCCATCGG] consensusID : consensus_4804#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [ATGTCTGTTACCTGTTTGAATTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACATTGTATTTCAACATTTCTACATTCAACTTGTGTACCAGCTTGAACACCTTGAGAGAAACAGGGATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAAGAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACGTGGTTTTTGGTAGTACAGTAGGGACTTGAGCCATCGG] [+] EMBL CD125983 [ATGTCTGTTACCTGTTTGAATTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACATTGTATTTCAACATTTCTACATTCAACTTGTGTACCAGCTTGAACACCTTGAGAGAAACAGGGATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAAGAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACGTGGTTTTTGGTAGTACAGTAGGGACTTGAGCCATCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4804#0 CCCAGACTCTCAGTCTGTATGTGTCTGTGATGAGTGATAAATTGTTTGCATCGTGGGTAC 60 consensus_4804#1 ------------------------------------------------------------ consensus_4804#0 TGTTACAACTGGTATTGATTCGTATGTTTGCGCGGCTGCCTCTCGAATCGACTGGGAAAC 120 consensus_4804#1 ------------------------------------------------------------ consensus_4804#0 AGTTACTTGTAACTTTTTATTTATTAATTGTGTAGTCGTTGGTGTGTGCTGAACGCTTCC 180 consensus_4804#1 ------------------------------------------------------------ consensus_4804#0 TTCTTTCGTTGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATAC 240 consensus_4804#1 ------------------ATGTCTGTTACCTGTTTGAATTTCTTGCTGACGGCATAATAC 42 * ** ** ****** ********************** consensus_4804#0 GTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACACTT 300 consensus_4804#1 GTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACA-TT 101 ********************************************************* ** consensus_4804#0 GTATTTCAACATTTCTACATTCAACTTGTGTAACGACTTGAACACCTTGAGAGAAACAGG 360 consensus_4804#1 GTATTTCAACATTTCTACATTCAACTTGTGTACCAGCTTGAACACCTTGAGAGAAACAGG 161 ******************************** * ************************ consensus_4804#0 GATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAA 420 consensus_4804#1 GATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAA 221 ************************************************************ consensus_4804#0 GAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACG 480 consensus_4804#1 GAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACG 281 ************************************************************ consensus_4804#0 TGGTTTTTGGTAGTACAGTAGGGACTCGAGCCATCGG 517 consensus_4804#1 TGGTTTTTGGTAGTACAGTAGGGACTTGAGCCATCGG 318 ************************** ********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||