These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4846#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 872 fasta sequence [GCGAAAGGTATGCACCAAGTCACCAGTTATACTTGAAGTCAGTTCAAAATATAGCAAAGTTGACAAGTTAGATCATGCATTTGTTTTTATTCCGGATAAAGAAAAGGATTTTTACCTTATATATTTACTATTATCATCTAAGAGCGCAGACAAAAGCCGATCGATTATATTTACAAGCACATGGAGAGAATCATTTCGTATAGTGGCAATGCTTAAAAGTTTGGCCGATGTAATTAGTGCTGCTTCTGCCCCACTTAATGGTGTTATGCAGCAAGATAAACGTCAGTCATCTTTATTCGATTTCCGTACAGGTCGTGTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGACTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGATTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACGTGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTTGAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAGACAACAANNGTATACAGCTGANCAAGAAGCTCGAGCGAACCTACGTATCANAGAANAGCAGAAACCACTAANGAAAANAAGANAGATTCATCANNACATNACAGGNNTGCCAAAGCCCAACGATCACATCAAGGTAAAGAAGTGGATCCANNGAGAGACAACAGTGAATCAGAATAGTTNACTATTTTAGCACAAATTTGTAATACTACTAGATCATACACTGGATTTTCATATAATCTTTTGGGATTANTTATTNATCTAACTAGCATCAG] [+] EMBL CD080449 [GCGAAAGGTATGCACCAAGTCACCAGTTATACTTGAAGTCAGTTCAAAATATAGCAAAGTTGACAAGTTAGATCATGCATTTGTTTTTATTCCGGATAAAGAAAAGGATTTTTACCTTATATATTTACTATTATCATCTAAGAGCGCAGACAAAAGCCGATCGATTATATTTACAAGCACATGGAGAGAATCATTTCGTATAGTGGCAATGCTTAAAAGTTTGGCCGATGTAATTAGTGCTGCTTCTGCCCCACTTAATGGTGTTATGCAGCAAGATAAACGTCAGTCATCTTTATTCGATTTCCGTACAGGTCGTGTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGACTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGATTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACGTGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTTGAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAGACAACAANNGTATACAGCTGANCAAGAAGCTCGAGCGAACCTACGTATCANAGAANAGCAGAAACCACTAANGAAAANAAGANAGATTCATCANNACATNACAGGNNTGCCAAAGCCCAACGATCACATCAAGGTAAAGAAGTGGATCCANNGAGAGACAACAGTGAATCAGAATAGTTNACTATTTTAGCACAAATTTGTAATACTACTAGATCATACACTGGATTTTCATATAATCTTTTGGGATTANTTATTNATCTAACTAGCATCAG] [-] EMBL CD069639 [ TTTTATTCCGGATAAAGAAAAGGATTTTTACCTGATATATTTACTATTATCGTCTAAGAGCGCAGACAAAAGCCGATCGATTATATTTACAAGCACATGGAGAGAATCATTTCGTATAGTGGCAATGCTTAAAAGTTTGGCCGATGTAATTAGTGCTGCCTCTGCCCCACTTAATGGTGTTATGCAGCAAGATAAACGTCAGTCATCTTTATTCGATTTCCGTACAGGTCGTGTTTCAATACTTGTAGCTACTGATCTGGCCTCC AGACTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGATTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACGTGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTTGAACGA ] consensusID : consensus_4846#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [GTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGACTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGATTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACGTGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTTGAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAGACAACAAGTAATACAAGCTGACAAAGAAGCTCGAGCGAACCTACGTATCAAAGAAAAGCAGAAACAACTAAAGAAAAAAAGAAAAGATTCATCAAACAATAACAGGTTGCCAAAAGCCAAACGATCACATCAAGGTAAAGAAGTGGATCCAGAAGAGACAAACAGTGAATCAGAATAGTTTACTATTTTTAGCACAAATTTTGTAAATACTACTAGATCATCACACTTGGATTTTTCATATAATTCTTTTTTGGAATATATTTATTTAATCTAACTAAGCAATACAAGCTGA] [-] EMBL CD074361 [GTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGACTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGATTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACGTGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTTGAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAGACAACAAGTAATACAAGCTGACAAAGAAGCTCGAGCGAACCTACGTATCAAAGAAAAGCAGAAACAACTAAAGAAAAAAAGAAAAGATTCATCAAACAATAACAGGTTGCCAAAAGCCAAACGATCACATCAAGGTAAAGAAGTGGATCCAGAAGAGACAAACAGTGAATCAGAATAGTTTACTATTTTTAGCACAAATTTTGTAAATACTACTAGATCATCACACTTGGATTTTTCATATAATTCTTTTTTGGAATATATTTATTTAATCTAACTAAGCAATACAAGCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4846#0 GCGAAAGGTATGCACCAAGTCACCAGTTATACTTGAAGTCAGTTCAAAATATAGCAAAGT 60 consensus_4846#1 ------------------------------------------------------------ consensus_4846#0 TGACAAGTTAGATCATGCATTTGTTTTTATTCCGGATAAAGAAAAGGATTTTTACCTTAT 120 consensus_4846#1 ------------------------------------------------------------ consensus_4846#0 ATATTTACTATTATCATCTAAGAGCGCAGACAAAAGCCGATCGATTATATTTACAAGCAC 180 consensus_4846#1 ------------------------------------------------------------ consensus_4846#0 ATGGAGAGAATCATTTCGTATAGTGGCAATGCTTAAAAGTTTGGCCGATGTAATTAGTGC 240 consensus_4846#1 ------------------------------------------------------------ consensus_4846#0 TGCTTCTGCCCCACTTAATGGTGTTATGCAGCAAGATAAACGTCAGTCATCTTTATTCGA 300 consensus_4846#1 ------------------------------------------------------------ consensus_4846#0 TTTCCGTACAGGTCGTGTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGA 360 consensus_4846#1 ----------------GTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGA 44 ******************************************** consensus_4846#0 CTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGA 420 consensus_4846#1 CTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGA 104 ************************************************************ consensus_4846#0 TTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACG 480 consensus_4846#1 TTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACG 164 ************************************************************ consensus_4846#0 TGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTT 540 consensus_4846#1 TGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTT 224 ************************************************************ consensus_4846#0 GAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAG 600 consensus_4846#1 GAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAG 284 ************************************************************ consensus_4846#0 ACAACAANNGTATACA-GCTGANCAAGAAGCTCGAGCGAACCTACGTATCANAGAANAGC 659 consensus_4846#1 ACAACAAGTA-ATACAAGCTGACAAAGAAGCTCGAGCGAACCTACGTATCAAAGAAAAGC 343 ******* ***** ***** *************************** **** *** consensus_4846#0 AGAAACCACTAANGAAAANAAGANA-GATTCATCANNACATNACAGGNNTGCCAAAGCCC 718 consensus_4846#1 AGAAACAACTAAAGAAAAAAAGAAAAGATTCATCAAACAATAACAGGTTGCCAAAAGCCA 403 ****** ***** ***** **** * ********* ** ***** * ****** consensus_4846#0 AACGATCACATCAAGGTAAAGAAGTGGATCCANNGAGAGACAACAGTGAATCAGAATAGT 778 consensus_4846#1 AACGATCACATCAAGGTAAAGAAGTGGATCCAGAAGAGACAAACAGTGAATCAGAATAGT 463 ******************************** ******************* consensus_4846#0 TNACTATTTT-AGCACAAATTT-GTAA-TACTACTAGATCAT-ACACTGGA--TTTTCAT 832 consensus_4846#1 TTACTATTTTTAGCACAAATTTTGTAAATACTACTAGATCATCACACTTGGATTTTTCAT 523 * ******** *********** **** ************** ***** * ******* consensus_4846#0 ATAATC---TTTTGGGAT-TANTTATTNA-TCTAACTA-GCATCAG------- 872 consensus_4846#1 ATAATTCTTTTTTGGAATATATTTATTTAATCTAACTAAGCAATACAAGCTGA 576 ***** ****** ** ** ***** * ******** *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||