cluster # 4881

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Schistosoma mansoni
cluster # 4881 cluster # 4881 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4881#0 length = 509 sequences # 2

consensus_4881#1 length = 277 sequences # 1

consensusID : consensus_4881#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 509
fasta sequence

                              [CAGTACGGAAGTCAAATGAGTCGGCAACAAGTAGATATTTCCGACCTGCCGTGAACTAAACAAATCATTNGACTGAAAATGACATGGCGAAATTTAGTTTTTCCCACAATTCAAACTAGCCATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCATGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGAAGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAACAATATACCTTGGTCTGTACTTCATTACAACGTAACTGATCTCATTTCTGATCCCAATAAAAATATTTCAGGGTCAGAAAGATTTTCAGTCACAACGTCCTCATCACAGTGTATCTATCTACATCGTATCGGTTTAACTTGGAGTTGGAATTCAATTTTACGTACTTATGAATCTATTATGAAGTTCAATGGTTTTCTTCTAGGTTTAATTG]

[+] EMBL CD086042             [CAGTACGGAAGTCAAATGAGTCGGCAACAAGTAGATATTTCCGACCTGCCGTGAACTAAACAAATCATTNGACTGAAAATGACATGGCGAAATTTAGTTTTTCCCACAATTCAAACTAGCCATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCATGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGAAGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAACAATATACCTTGGTCTGTACTTCATTACAACGTAACTGATCTCATTTCTGATCCCAATAAAAATATTTCAGGGTCAGAAAGATTTTCAGTCACAACGTCCTCATCACAGTGTATCTATCTACATCGTATCGGTTTAACTTGGAGTTGGAATTCAATTTTACGTACTTATGAATCTATTATGAAGTTCAATGGTTTTCTTCTAGGTTTAATTG]
[+] EMBL CD086281             [CAGTACGGAAGTCAAATGAGTCGGCAACAAGTAGATATTTCCGACCTGCCGTGAACTAAACAAATCATT GACTGAAAATGACATGGCGAAATTTAGTTTTTCCCACAATTCAAACTAGCCATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCATGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGAAGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAACAATATACCTTGGTCTGTACTTCATTACAACGTAACTGATCTCATTTCTGATCCCAATAAAAATATTTCAGAGTCAGAAAGATTTTCAGTCACAACGTCCTCATCACAGTGTATCTATCTACATCGTATCGGGTTAACTTGGAGTTGGAATTCAATTTTACATACTTATGAATCTATTATGAAGTTCAATGGTTTTCTTCTAGGTTTAATTG]




>consensus_4881#0
CAGTACGGAAGTCAAATGAGTCGGCAACAAGTAGATATTTCCGACCTGCCGTGAACTAAA
CAAATCATTNGACTGAAAATGACATGGCGAAATTTAGTTTTTCCCACAATTCAAACTAGC
CATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCA
TGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGA
AGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAACAA
TATACCTTGGTCTGTACTTCATTACAACGTAACTGATCTCATTTCTGATCCCAATAAAAA
TATTTCAGGGTCAGAAAGATTTTCAGTCACAACGTCCTCATCACAGTGTATCTATCTACA
TCGTATCGGTTTAACTTGGAGTTGGAATTCAATTTTACGTACTTATGAATCTATTATGAA
GTTCAATGGTTTTCTTCTAGGTTTAATTG

consensusID : consensus_4881#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [TAGTTAATGGTGAGCAACAAGAATCAAATGATTCATTAATGGAGTTATCTCTTTTTGGTCATAATTCATTGATATCTGATAAAGCACAATTCAATCTAGCCATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCATGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGAAGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAA]

[-] EMBL CD195968             [TAGTTAATGGTGAGCAACAAGAATCAAATGATTCATTAATGGAGTTATCTCTTTTTGGTCATAATTCATTGATATCTGATAAAGCACAATTCAATCTAGCCATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCATGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGAAGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAA]




>consensus_4881#1
TAGTTAATGGTGAGCAACAAGAATCAAATGATTCATTAATGGAGTTATCTCTTTTTGGTC
ATAATTCATTGATATCTGATAAAGCACAATTCAATCTAGCCATTACTCCATACACTTTGA
ATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCATGAAATTGGTTTAAAACTGT
TTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGAAGTTAATTTTAAACGCACAT
TTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4881#0      CAGTACGGAAGTCAAATGAGTCGGCAACAAGTAGATATTTCCGACCTGCCGTGAACTAAA 60
consensus_4881#1      --------TAGTTAA--TGGTGAGCAACAAGAA------TCAAATGATTCATTAATGGAG 44
                               *** **    **  ******** *      **  *     * * **   * 

consensus_4881#0      CAAATCATTNGACTGAAAATGACATGGCGAAATTTAGTTTTTCCCACAATTCAAACTAGC 120
consensus_4881#1      TTATCTCTTT--TTGGTCATAATTCATTGATATCTGATAAAGC--ACAATTCAATCTAGC 100
                        *    **    **   ** *      ** ** *  *    *  ********* *****

consensus_4881#0      CATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCA 180
consensus_4881#1      CATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCA 160
                      ************************************************************

consensus_4881#0      TGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGA 240
consensus_4881#1      TGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGA 220
                      ************************************************************

consensus_4881#0      AGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAACAA 300
consensus_4881#1      AGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAA--- 277
                      *********************************************************   

consensus_4881#0      TATACCTTGGTCTGTACTTCATTACAACGTAACTGATCTCATTTCTGATCCCAATAAAAA 360
consensus_4881#1      ------------------------------------------------------------
                                                                                  

consensus_4881#0      TATTTCAGGGTCAGAAAGATTTTCAGTCACAACGTCCTCATCACAGTGTATCTATCTACA 420
consensus_4881#1      ------------------------------------------------------------
                                                                                  

consensus_4881#0      TCGTATCGGTTTAACTTGGAGTTGGAATTCAATTTTACGTACTTATGAATCTATTATGAA 480
consensus_4881#1      ------------------------------------------------------------
                                                                                  

consensus_4881#0      GTTCAATGGTTTTCTTCTAGGTTTAATTG 509
consensus_4881#1      -----------------------------