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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4900 cluster # 4900       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4900#0 length = 238 sequences # 2  
consensus_4900#1 length = 233 sequences # 1  

consensusID : consensus_4900#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 238
fasta sequence
                              [AAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTTGTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCCCTACCAAGTTTTTGATACTTGTAATAATACGTATTTTTCACTGTTCTTTCACTATATAAAAAAATTTATTCGTCTTCACAAATACATGAATATATATACTATTTATTCATTATTATTCCCTT]

[+] EMBL CD164053             [AAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTTGTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCCCTACCAAGTTTTTGATACTTGTAATAATACGTATTTTTCACTGTTCTTTCACTATATAAAAAAATTTATTCGTCTTCACAAATACATGAATATATATACTATTTATTCATTATTATTCCCTT]
[+] EMBL CD163954             [AAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTTGTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCCCTACCAAGTTTTTGATACTTGTAATAATACGTATTTTTCACTGTTCTTTCACTATATAAAAAAATTTATTCGTCTTCACAAATACATGAATATATATACTATTTATTCATTATTATTCCCT ]


>consensus_4900#0 AAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTTGTTC CTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCCCTAC CAAGTTTTTGATACTTGTAATAATACGTATTTTTCACTGTTCTTTCACTATATAAAAAAA TTTATTCGTCTTCACAAATACATGAATATATATACTATTTATTCATTATTATTCCCTT



consensusID : consensus_4900#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 233
fasta sequence
                              [AATCAAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTTGTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCCCTACCAAGTTTTTGATACTTGTAATAATATGTATTCTTCACTGTTCTTTCACTATATAAAAAAATTTTTTCGTCTTACAGAAGGCAAAGTGGCAATTACGCATAGTTTCCCGA]

[-] EMBL CD124573             [AATCAAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTTGTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCCCTACCAAGTTTTTGATACTTGTAATAATATGTATTCTTCACTGTTCTTTCACTATATAAAAAAATTTTTTCGTCTTACAGAAGGCAAAGTGGCAATTACGCATAGTTTCCCGA]


>consensus_4900#1 AATCAAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTT GTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCC CTACCAAGTTTTTGATACTTGTAATAATATGTATTCTTCACTGTTCTTTCACTATATAAA AAAATTTTTTCGTCTTACAGAAGGCAAAGTGGCAATTACGCATAGTTTCCCGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4900#0      ----AAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTT 56
consensus_4900#1      AATCAAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTT 60
                          ********************************************************

consensus_4900#0      GTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCC 116
consensus_4900#1      GTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCC 120
                      ************************************************************

consensus_4900#0      CTACCAAGTTTTTGATACTTGTAATAATACGTATTTTTCACTGTTCTTTCACTATATAAA 176
consensus_4900#1      CTACCAAGTTTTTGATACTTGTAATAATATGTATTCTTCACTGTTCTTTCACTATATAAA 180
                      ***************************** ***** ************************

consensus_4900#0      AAAATTTATTCGTCTTCACAAATACATGAATATATATACTATTTATTCATTATTATTCCC 236
consensus_4900#1      AAAATTTTTTCGTCTTACAGAAGGCAAAGTGGCAATTACGCATAGTTTCCCGA------- 233
                      ******* ********    **  **       *  ***   *  **             

consensus_4900#0      TT 238
consensus_4900#1      --
                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)