These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 671 fasta sequence [CTCGAGGCCAAAAATTCGGCACGAGGGTTGATCGGAAACCCATTCCATGTTCCGAAAGAAATCTTTCGTCTTGTAAATCATATAAATGAATATATAACAGAGCCTGATCTATTTCGTCAAATGGGTCCATCTTCTGACATTGGTATTATACGTGATATATTGGATACAACTCCAGCTAATTGTCCTTTTCCTGAAACAATTTCTGTACATTCAATTACATCGTGTTTATTATTGTTTTTGAATACACTCCCGGAATCTGTGATACCACAAGAATTTCATGAGAAATGTTTTAATTCATTAGCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGTCGAACACAACAACAGCTCAAAAACATGCTGTTGCGATGAAACAGCTTAAGCGAGCCGCTTTTATTAGCATTTTTCTCCGTCAAAATTATTTCATATCTAATCCTTCACTAATGTCAACATCTCAACACTAGTTTATGATAATATTATTATTATTACTTTNTCTAAACACAGCCTTTNTTCTGTCAATATGACAAAT] [+] EMBL CD080567 [CTCGAGGCCAAAAATTCGGCACGAGGGTTGATCGGAAACCCATTCCATGTTCCGAAAGAAATCTTTCGTCTTGTAAATCATATAAATGAATATATAACAGAGCCTGATCTATTTCGTCAAATGGGTCCATCTTCTGACATTGGTATTATACGTGATATATTGGATACAACTCCAGCTAATTGTCCTTTTCCTGAAACAATTTCTGTACATTCAATTACATCGTGTTTATTATTGTTTTTGAATACACTCCCGGAATCTGTGATACCACAAGAATTTCATGAGAAATGTTTTAATTCATTAGCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGTCGAACACAACAACAGCTCAAAAACATGCTGTTGCGATGAAACAGCTTAAGCGAGCCGCTTTTATTAGCATTTTTCTCCGTCAAAATTATTTCATATCTAATCCTTCACTAATGTCAACATCTCAACACTAGTTTATGATAATATTATTATTATTACTTTNTCTAAACACAGCCTTTNTTCTGTCAATATGACAAAT] [+] EMBL CD059578 [ ATTTCATGAGAAATGTTTTAATTCATTAGCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGT ] consensusID : consensus_4902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [ATATACGTAATGAATTTTCTTATTTGATATTTACTTATCATCAATATGTTGTGACTTTTGTGAAAAAAATTATTTTTCTTCATTCCTTTTAAATATCCAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGGTAAGCTAAGTGAAGACTTATTATTACCATAGGAAGTTCATAAAAATTATTATATATTAATTTTAATTAGATAATCATTTCAAACCAGAAAGCATTAAACAATTTTATACCAGTTCCATAGTTGAAAGGTTAATTGTTCATTGCAAAATCCGAAAATGCATACTGTTGAAGAGTTCGATACCAAAATGAAATAGCTGTCCAATGCTTCCTGTATTATAGTGACTGCCTGACAAAGTGTCAGTCTGTATGGTTTATACTATTTATGTTGATAGATATAAGTAGTTTGTATCAGAGATTAAAAGTAGAATTTTTACGGACAGAAGAG] [+] EMBL CD133901 [ATATACGTAATGAATTTTCTTATTTGATATTTACTTATCATCAATATGTTGTGACTTTTGTGAAAAAAATTATTTTTCTTCATTCCTTTTAAATATCCAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGGTAAGCTAAGTGAAGACTTATTATTACCATAGGAAGTTCATAAAAATTATTATATATTAATTTTAATTAGATAATCATTTCAAACCAGAAAGCATTAAACAATTTTATACCAGTTCCATAGTTGAAAGGTTAATTGTTCATTGCAAAATCCGAAAATGCATACTGTTGAAGAGTTCGATACCAAAATGAAATAGCTGTCCAATGCTTCCTGTATTATAGTGACTGCCTGACAAAGTGTCAGTCTGTATGGTTTATACTATTTATGTTGATAGATATAAGTAGTTTGTATCAGAGATTAAAAGTAGAATTTTTACGGACAGAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4902#0 CTCGAGGCCAAAAATTCGGCACGAGGGTTGATCGGAAACCCATTCCATGTTCCGAAAGAA 60 consensus_4902#1 ------------------------------------------------------------ consensus_4902#0 ATCTTTCGTCTTGTAAATCATATAAATGAATATATAACAGAGCCTGATCTATTTCGTCAA 120 consensus_4902#1 -------------------ATATACGT-AATGAATTTTCTTATTTGATAT-TTACTTATC 39 ***** * *** ** **** * ** * * consensus_4902#0 ATGGGTCCATCTTCTGACATTGGTATTATACGTGATATATTGGATACAACTCCAGCTAAT 180 consensus_4902#1 ATCAAT--ATGTTGTGACTTTTGTGAAAAAAATTATTTTTCT----TCATTCCTTTTAAA 93 ** * ** ** **** ** ** * * * ** * * * *** *** consensus_4902#0 TGTCCTTTTCCTGAAACAATTTCTGTACATTCAATTACATCGTGTTTATTATTGTTTTTG 240 consensus_4902#1 TATCCAGGCTTTACAGCATCTTCC-TATTTGTAATCAGA----ATTTATTTTATTATTTA 148 * *** * * ** *** ** * *** * * ****** * * *** consensus_4902#0 AATACACTCCCGGAATCTGTGATACCACAAGAATTTCATGAGAAATGTTTTAATTCATTA 300 consensus_4902#1 ATTACATT-------TATGCAACGTTGTTTGACTTTCA--AAGAACAGAATGGT------ 193 * **** * * ** * ** ***** * ** * * consensus_4902#0 GCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTA 360 consensus_4902#1 ACAGATATTGA-TCTACTTGGTAAGCTAAGTGAAGACTTATTATTACCATAGGAAGTTCA 252 ** ** * ** *** ** * *** *** **** * * ** * consensus_4902#0 TTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACA 420 consensus_4902#1 TAAAAATTATTA--TATATTAATTTTA-ATTAGATAATCATTTCAAACCAGAAAGCATTA 309 * * * *** ** *** ** * ** * * * * * ***** * * consensus_4902#0 GATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGTCGAAC 480 consensus_4902#1 AACAATTTTATACCAGTTCCATAGTTGAAAGGTTAATTGTTCATTGCAAAATC--CGAAA 367 * * * * *** * ***** ** * *** ** *** * ** **** consensus_4902#0 ACAACAACAGCTCAAAAACATGCTGTTGCGATGAAACAGCTTAAGCGAGCCGCTTTTATT 540 consensus_4902#1 ATGCATACTGTTGAAGAGTTCGATACCAAAATGAAATAGCTGTCCAATGCTTCCTGTATT 427 * ** * * ** * * * ****** **** ** * * **** consensus_4902#0 AGCATTTTTCTCCGTCAAAAT--TATTTCATATCTAATCCTTCACTAATGTCAACATCTC 598 consensus_4902#1 ATAGTGACTGCCTGACAAAGTGTCAGTCTGTATGGTTTATACTATTTATGTTGATAGAT- 486 * * * * * **** * * * *** * * * **** * * * consensus_4902#0 AACACTAGTTTATGATA-ATATTATTATTATTACTTTNTCTAAACACAGCCTTTNTTCTG 657 consensus_4902#1 ATAAGTAGTTTGTATCAGAGATTAAAAGTAGAATTTTTACGGACAGAAGAG--------- 537 * * ****** * * * **** * ** * *** * * ** consensus_4902#0 TCAATATGACAAAT 671 consensus_4902#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||