These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence [TCTTGTGATTTGTTGCATGATGTGCTATCATAATTTTCTTATACCTTACGAGTAGTGTACAGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGGTGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTATAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCATTTAATCCTGTCGGACATCTTAAAGGGGAAGTTACCAGTGTTCGAAGATTGTTAACTCGCTGCATACATCTTTCCGAAGAAGCTGGTGGTCTTATAAAATTTATAAGTCTGAAGCATAACCTTAATTCACGTACCAAACACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTACCAACACACCGTCTGCTTGATTATAAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTGGTAATATGGGTAGATCCTTTAGACGGAACT] [-] EMBL CD199879 [TCTTGTGATTTGTTGCATGATGTGCTATCATAATTTTCTTATACCTTACGAGTAGTGTACAGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGGTGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTATAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCA ] [+] EMBL CD078444 [ TGCTATCATAATTTTCTTATACCTTACGAGTAGTGTACAGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGGTGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTATAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCATTTAATCCTGTCGGACATCTTAAAGGGGAAGTTACCAGTGTTCGAAGATTGTTAACTCGCTGCATACATCTTTCCGAAGAAGCTGGTGGTCTTATAAAATTTATAAGTCTGAAGCATAACCTTAATTCACGTACCAAACACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTACCAACACACCGTCTGCTTGATTATAAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTGGTAATATGGGTAGATCCTTTAGACGGAACT] consensusID : consensus_4923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [TTTTATTATGTTTTTAATGGAGTTTGTTCTCTGAGCTGAATGGTCCGTCGCAAGTTGCACTTCTACGACCATTCACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTACCATCACACCGTCTGCTTGATTATCAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTG] [+] EMBL CD166850 [TTTTATTATGTTTTTAATGGAGTTTGTTCTCTGAGCTGAATGGTCCGTCGCAAGTTGCACTTCTACGACCATTCACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTACCATCACACCGTCTGCTTGATTATCAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4923#0 TCTTGTGATTTGTTGCATGATGTGCTATCATAATTTTCTTATACCTTACGAGTAGTGTAC 60 consensus_4923#1 ------------------------------------------------------------ consensus_4923#0 AGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGG 120 consensus_4923#1 ------------------------------------------------------------ consensus_4923#0 TGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTA 180 consensus_4923#1 ------------------------------------------------------------ consensus_4923#0 TAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCATTTAATCCTGTCGGACATCTTA 240 consensus_4923#1 ------------------------------------------------------------ consensus_4923#0 AAGGGGAAGTTACCAGTGTTCGAAGATTGTTAACTCGCTGCATACATCTTTCCGAAGAAG 300 consensus_4923#1 -------------------------------------TTTTAT-TATGTTTTTAATGGAG 22 * ** ** *** * * ** consensus_4923#0 CTGGTGGTCTTATAAAATTTATAAGTCTGAAGCATAACCTTAATTCACGTACCAAACACG 360 consensus_4923#1 TTTGTTCTCT----GAGCTGAATGGTCCGTCGCA-AGTTGCACTTCTACGACCATTCACG 77 * ** *** * * * *** * *** * * *** **** **** consensus_4923#0 GGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCG 420 consensus_4923#1 GGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCG 137 ************************************************************ consensus_4923#0 TGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTAC 480 consensus_4923#1 TGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTAC 197 ************************************************************ consensus_4923#0 CAACACACCGTCTGCTTGATTATAAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTC 540 consensus_4923#1 CATCACACCGTCTGCTTGATTATCAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTC 257 ** ******************** ************************************ consensus_4923#0 TTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTGGTAATATGGGTAGATCCTTTAG 600 consensus_4923#1 TTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTG---------------------- 295 ************************************** consensus_4923#0 ACGGAACT 608 consensus_4923#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||